Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SGO_RS02140 Genome accession   NC_009785
Coordinates   478229..479017 (+) Length   262 a.a.
NCBI ID   WP_008808441.1    Uniprot ID   A8AVD7
Organism   Streptococcus gordonii str. Challis substr. CH1     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 473229..484017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGO_RS02130 (SGO_0429) - 473692..474906 (+) 1215 WP_011999940.1 pyridoxal phosphate-dependent aminotransferase -
  SGO_RS02135 (SGO_0430) - 475283..477943 (+) 2661 WP_011999941.1 SEC10/PgrA surface exclusion domain-containing protein -
  SGO_RS02140 (SGO_0431) codY 478229..479017 (+) 789 WP_008808441.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SGO_RS02145 (SGO_0432) - 479017..479574 (+) 558 WP_011999942.1 cysteine hydrolase family protein -
  SGO_RS02150 (SGO_0434) aspS 479974..481710 (+) 1737 WP_011999944.1 aspartate--tRNA ligase -
  SGO_RS02155 (SGO_0435) gatC 481914..482216 (+) 303 WP_005591696.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  SGO_RS02160 (SGO_0436) gatA 482216..483682 (+) 1467 WP_011999945.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29801.06 Da        Isoelectric Point: 5.0874

>NTDB_id=27034 SGO_RS02140 WP_008808441.1 478229..479017(+) (codY) [Streptococcus gordonii str. Challis substr. CH1]
MAHLLEKTRKITSILKRSEEQLQEELPYNDITRQLAEIMDCNACIVNSKGRLLGYFMRYKTNNDRVEAFYQTKMFPDDYI
RSANLIYDTEANLPVEHELSIFPVETQSDFPDGLTTIAPIHVSGIRLGSLIIWRNDEKFDNDDLVLVEISSTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGHLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPDVFEEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=27034 SGO_RS02140 WP_008808441.1 478229..479017(+) (codY) [Streptococcus gordonii str. Challis substr. CH1]
ATGGCACATTTATTAGAAAAAACAAGAAAAATTACATCTATTTTGAAGCGCTCTGAAGAGCAACTTCAAGAAGAGTTGCC
ATACAATGACATTACAAGACAGTTAGCAGAAATTATGGACTGTAATGCTTGTATTGTTAATAGCAAGGGACGTTTGTTGG
GTTACTTTATGCGGTACAAAACAAATAATGACCGTGTAGAGGCCTTCTACCAAACTAAAATGTTCCCAGATGATTATATT
CGTTCTGCTAATTTAATTTACGATACAGAGGCTAATTTGCCAGTCGAGCATGAATTATCCATCTTTCCGGTTGAGACACA
GTCGGATTTTCCAGATGGTTTGACAACTATTGCACCAATTCATGTTTCAGGGATTCGTTTGGGTTCCTTGATTATTTGGC
GAAATGACGAGAAATTTGATAATGATGATTTGGTCTTAGTAGAAATTTCAAGTACCGTTGTGGGCATTCAGTTATTGAAT
TTCCAAAGAGAAGAAGATGAAAAGAATATCCGTCGTCGTACAGCAGTGACAATGGCGGTAAACACTTTGTCTTACTCAGA
ATTACGGGCTGTTTCGGCCATCCTAGGAGAACTAAATGGGAATGAAGGCCACTTGACAGCTTCTGTCATTGCTGACCGTA
TTGGAATTACGCGGTCTGTTATTGTCAATGCCTTGCGTAAGCTAGAGAGTGCTGGGATCATTGAGAGCCGGTCTTTGGGA
ATGAAGGGGACCTATCTGAAAGTGTTGATTCCAGATGTTTTTGAGGAAATTAAAAAGAGGGACTACTGA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8AVD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

62.214

100

0.622
  codY Bacillus subtilis subsp. subtilis str. 168

47.967

93.893

0.45

Multiple sequence alignment