Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   C3K08_RS13900 Genome accession   NZ_CP026516
Coordinates   2747028..2748116 (+) Length   362 a.a.
NCBI ID   WP_104991828.1    Uniprot ID   -
Organism   Deinococcus sp. NW-56     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2742028..2753116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3K08_RS13875 - 2742411..2742644 (+) 234 WP_104991823.1 hypothetical protein -
  C3K08_RS13880 - 2742681..2744270 (+) 1590 WP_104991824.1 dihydrolipoamide acetyltransferase family protein -
  C3K08_RS13885 - 2744442..2744861 (+) 420 WP_104991825.1 hypothetical protein -
  C3K08_RS13890 - 2744862..2745524 (+) 663 WP_104991826.1 response regulator transcription factor -
  C3K08_RS13895 - 2745610..2746998 (+) 1389 WP_104991827.1 HAMP domain-containing sensor histidine kinase -
  C3K08_RS13900 dprA 2747028..2748116 (+) 1089 WP_104991828.1 DNA-processing protein DprA Machinery gene
  C3K08_RS13905 - 2748129..2748389 (+) 261 WP_104991829.1 hypothetical protein -
  C3K08_RS13910 - 2748423..2749403 (+) 981 WP_104991830.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37280.60 Da        Isoelectric Point: 6.8524

>NTDB_id=270064 C3K08_RS13900 WP_104991828.1 2747028..2748116(+) (dprA) [Deinococcus sp. NW-56]
MTVAADSAAAQTELLALLTLRFTPALGPRRTESLRRHFGSAGAALAAPLTALRGVPGLEAKTVAAIGTPGPREQAEAELR
KAQAEGVTLLGRGLPGYPEALEALGDPPAVLWVRGELPDLPAVPRAVGIVGTRGASPHARSLTRDLAADLARGGVAVVSG
LARGIDTEAHRATVDAGGLSLGVLGSAVNYIYPSENVPLSRRLTLVSEYPLGTGPAQHHFPARNRLIAALSAGVVVVEGE
LRSGSLITATHALECGRTVFAVPGRAGDPRAAGPHRLLREGAVLTETAGDVLTELGWENGPAAPTPDLPPEQARVYAALS
TPATLDDLRGATGLGLAELQTALVMLQLMGLAEELGGRWTRR

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=270064 C3K08_RS13900 WP_104991828.1 2747028..2748116(+) (dprA) [Deinococcus sp. NW-56]
GTGACCGTCGCCGCTGACTCCGCCGCTGCCCAGACCGAACTGCTCGCGCTGCTCACCCTGCGCTTCACGCCCGCGCTGGG
GCCGCGCCGCACCGAGAGCCTGCGGCGGCACTTCGGCTCGGCGGGGGCAGCGCTCGCAGCGCCCCTGACCGCGCTGCGGG
GGGTGCCGGGGCTGGAGGCCAAGACGGTCGCCGCCATCGGCACGCCGGGGCCACGCGAGCAGGCCGAGGCGGAGCTGCGC
AAAGCCCAGGCCGAGGGTGTCACCCTGCTGGGGCGCGGGCTGCCCGGCTACCCGGAGGCCCTCGAAGCTCTGGGTGACCC
CCCGGCGGTGCTGTGGGTGCGGGGCGAGCTGCCCGACCTCCCGGCGGTGCCCCGCGCGGTGGGAATCGTGGGGACGCGGG
GCGCGAGTCCGCACGCCCGTTCCCTGACCCGCGACCTCGCCGCCGACCTCGCGCGGGGGGGGGTGGCGGTGGTCAGCGGT
CTGGCGCGCGGCATCGACACCGAGGCGCACCGGGCGACGGTGGACGCCGGGGGCCTGAGCCTCGGCGTGCTGGGAAGCGC
GGTGAACTACATCTATCCCAGCGAGAACGTGCCGCTGTCCCGGCGACTCACCCTGGTAAGCGAGTACCCGCTGGGCACTG
GCCCCGCCCAGCACCATTTCCCGGCCCGCAACCGCCTGATCGCGGCGCTCTCGGCGGGCGTGGTCGTCGTGGAGGGCGAA
CTGAGGAGCGGCTCCCTCATCACCGCTACGCACGCGCTGGAATGTGGGCGTACCGTCTTCGCGGTGCCGGGCCGCGCCGG
GGACCCCCGCGCCGCTGGCCCACACCGCTTGCTGCGCGAGGGGGCGGTGCTCACCGAGACGGCAGGCGACGTGCTGACCG
AACTGGGCTGGGAGAACGGCCCCGCCGCCCCCACCCCCGACCTCCCGCCCGAGCAGGCCCGCGTGTACGCGGCGCTGAGC
ACGCCCGCCACCCTGGACGATCTGCGGGGAGCGACGGGGCTGGGCCTCGCAGAGCTGCAGACGGCGCTGGTGATGCTGCA
GCTGATGGGCCTCGCCGAGGAACTCGGCGGGCGCTGGACGCGTCGGTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(301-357)

DNA recombination-mediator protein A (DNA_processg_A)

(83-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

70.37

96.961

0.682

Multiple sequence alignment