Detailed information NTG0270058

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C3K08_RS11935
• Genome accession: NZ_CP026516
• Coordinates: 2380278..2381420 (+)
• Length: 380 a.a.
• NCBI ID: WP_104991505.1
• Uniprot ID: -
• Organism: Deinococcus sp. NW-56
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2375278..2386420

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C3K08_RS11915	minE	2375766..2376029 (-)	264	WP_104991502.1	cell division topological specificity factor MinE	-
C3K08_RS11920	minD	2376031..2376831 (-)	801	WP_104991503.1	septum site-determining protein MinD	-
C3K08_RS11925	rimO	2376982..2378487 (+)	1506	WP_104991504.1	30S ribosomal protein S12 methylthiotransferase RimO	-
C3K08_RS11930	-	2378546..2380009 (-)	1464	WP_234009066.1	nitronate monooxygenase	-
C3K08_RS11935	pilD	2380278..2381420 (+)	1143	WP_104991505.1	A24 family peptidase	Machinery gene
C3K08_RS11940	-	2381661..2382092 (-)	432	WP_234009067.1	hypothetical protein	-
C3K08_RS11945	-	2382092..2382634 (-)	543	WP_199776928.1	VUT family protein	-
C3K08_RS11950	-	2382721..2383395 (-)	675	WP_104992056.1	arginase	-
C3K08_RS11955	-	2383422..2384396 (-)	975	WP_104991506.1	GNAT family N-acetyltransferase	-
C3K08_RS11960	-	2384393..2385370 (-)	978	WP_104991507.1	GNAT family N-acetyltransferase	-
C3K08_RS11965	-	2385367..2386374 (-)	1008	WP_234009068.1	GNAT family N-acetyltransferase	-

Sequence

Protein

• Length: 380 a.a.
• Molecular weight: 39606.87 Da
• Isoelectric Point: 8.4416

>NTDB_id=270058 C3K08_RS11935 WP_104991505.1 2380278..2381420(+) (pilD) [Deinococcus sp. NW-56]
MSLDLLLVVFAGVLGLLVGSFSNVLIWRLPRGENVAFPPSHCPRCDHRLSPRDLVPVGSWVALGGKCRYCRAPIKARYPV
VELLTGVGYATIAALYPFALYGGATLGLFVLFTLLLVASAIDLDTYTIPDELTLPGVALGVGFSFLNARSGAVEGLGLPT
PAEAAQGALLGAGLLVTIDLIGSWVLRRFRERRYPETPIGYQQIALALLVGAWAGLGWGVAAAVLSAAANLLARRVVRVP
ELLTLGGLLVSVMLGGSGFGPGLIVMVQGALAAGGAVALLAGVYWWLRGDAADEDAPFDPAAMGFGDVKLAAVIGAFLGW
ERLLVAVVVAVFAGALLGLVQVALKRENRLKFGPYLALGAVVALIWGGAVVESYRTLLGL

Nucleotide

• Length: 1143 bp

>NTDB_id=270058 C3K08_RS11935 WP_104991505.1 2380278..2381420(+) (pilD) [Deinococcus sp. NW-56]
GTGAGTCTCGACCTCCTGCTCGTGGTGTTCGCTGGCGTGCTCGGCCTGCTGGTGGGGTCGTTTTCCAATGTGCTGATCTG
GCGGCTGCCGCGCGGGGAAAACGTCGCCTTTCCGCCCAGCCACTGCCCCCGCTGCGACCACCGCCTGTCTCCCCGCGACC
TCGTGCCCGTGGGGTCGTGGGTGGCGCTGGGCGGCAAGTGCCGCTACTGCCGCGCTCCCATCAAGGCCCGCTATCCGGTG
GTCGAGCTGCTGACCGGAGTGGGGTACGCGACCATCGCCGCGCTTTACCCTTTCGCGCTGTACGGCGGAGCCACGCTGGG
CCTGTTCGTGCTGTTCACGCTGCTGCTGGTAGCCAGCGCCATCGATCTGGACACCTACACCATCCCCGACGAGCTGACGC
TGCCGGGGGTGGCGCTGGGCGTGGGCTTCAGCTTTCTGAATGCGCGGTCGGGGGCGGTGGAGGGTTTGGGACTGCCGACC
CCCGCCGAGGCCGCGCAGGGGGCGCTGCTGGGCGCGGGCCTACTGGTGACCATCGACCTGATCGGGTCGTGGGTGCTGCG
ACGCTTCCGCGAGCGGCGCTACCCGGAAACGCCCATCGGGTATCAGCAGATCGCGCTCGCGCTGCTGGTGGGCGCGTGGG
CCGGGCTGGGGTGGGGCGTGGCGGCGGCGGTGCTGTCGGCGGCGGCGAACCTGCTCGCGCGGCGGGTCGTCCGGGTGCCG
GAACTGCTCACCCTGGGGGGCCTGCTCGTCAGCGTGATGCTGGGAGGGTCGGGCTTTGGCCCCGGCCTGATCGTGATGGT
GCAGGGGGCGCTCGCTGCTGGGGGTGCTGTCGCGCTCCTCGCGGGCGTGTACTGGTGGCTGCGCGGCGACGCTGCCGACG
AGGACGCCCCCTTTGACCCCGCCGCGATGGGCTTCGGAGATGTGAAGCTGGCGGCCGTCATCGGGGCGTTCCTGGGCTGG
GAGCGGCTGCTGGTGGCGGTCGTGGTTGCCGTGTTCGCGGGGGCGCTGCTGGGGCTGGTGCAGGTGGCCCTGAAACGCGA
GAATCGCCTCAAGTTCGGCCCCTACCTCGCGCTGGGCGCGGTGGTGGCGTTGATCTGGGGCGGGGCCGTGGTGGAGAGCT
ACCGGACGCTGCTGGGCCTGTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-94)

• Type IV leader peptidase family (Peptidase_A24) (237-339)

• Type IV leader peptidase family (Peptidase_A24) (109-229)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	68.041	100	0.695