Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   DOM02_RS29745 Genome accession   NZ_CP031677
Coordinates   6191420..6191944 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain E80     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6186420..6196944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOM02_RS29730 (DOM02_29605) aroB 6187536..6188642 (-) 1107 WP_019726985.1 3-dehydroquinate synthase -
  DOM02_RS29735 (DOM02_29610) aroK 6188692..6189210 (-) 519 WP_003095833.1 shikimate kinase AroK -
  DOM02_RS29740 (DOM02_29615) pilQ 6189222..6191366 (-) 2145 WP_019726987.1 type 4a pilus secretin PilQ Machinery gene
  DOM02_RS29745 (DOM02_29620) comL/pilP 6191420..6191944 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  DOM02_RS29750 (DOM02_29625) pilO 6191941..6192564 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  DOM02_RS29755 (DOM02_29630) pilN 6192561..6193157 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  DOM02_RS29760 (DOM02_29635) pilM 6193157..6194221 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  DOM02_RS29765 (DOM02_29640) - 6194406..6196877 (+) 2472 WP_019726988.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=269503 DOM02_RS29745 WP_003095836.1 6191420..6191944(-) (comL/pilP) [Pseudomonas aeruginosa strain E80]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=269503 DOM02_RS29745 WP_003095836.1 6191420..6191944(-) (comL/pilP) [Pseudomonas aeruginosa strain E80]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362