Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   DZ899_RS28080 Genome accession   NZ_CP031660
Coordinates   5916523..5917047 (-) Length   174 a.a.
NCBI ID   WP_117341371.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PABL017     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5911523..5922047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DZ899_RS28065 (DZ899_28065) aroB 5912639..5913745 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  DZ899_RS28070 (DZ899_28070) aroK 5913795..5914313 (-) 519 WP_003095833.1 shikimate kinase AroK -
  DZ899_RS28075 (DZ899_28075) pilQ 5914325..5916469 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  DZ899_RS28080 (DZ899_28080) comL/pilP 5916523..5917047 (-) 525 WP_117341371.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  DZ899_RS28085 (DZ899_28085) pilO 5917044..5917667 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  DZ899_RS28090 (DZ899_28090) pilN 5917664..5918260 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  DZ899_RS28095 (DZ899_28095) pilM 5918260..5919324 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  DZ899_RS28100 (DZ899_28100) - 5919509..5921980 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19111.88 Da        Isoelectric Point: 8.8636

>NTDB_id=268963 DZ899_RS28080 WP_117341371.1 5916523..5917047(-) (comL/pilP) [Pseudomonas aeruginosa strain PABL017]
MRARLILSSLLLASLAGCGDGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=268963 DZ899_RS28080 WP_117341371.1 5916523..5917047(-) (comL/pilP) [Pseudomonas aeruginosa strain PABL017]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGACGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362