Detailed information NTG0268826

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: BV11031_RS09870
• Genome accession: NZ_CP026362
• Coordinates: 1806306..1807085 (-)
• Length: 259 a.a.
• NCBI ID: WP_003238551.1
• Uniprot ID: A0A9W5PD99
• Organism: Bacillus vallismortis strain DSM 11031
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1801306..1812085

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BV11031_RS09840 (BV11031_09835)	fliH	1801322..1802074 (-)	753	WP_121642567.1	flagellar assembly protein FliH	-
BV11031_RS09845 (BV11031_09840)	fliG	1802067..1803083 (-)	1017	WP_010331101.1	flagellar motor switch protein FliG	-
BV11031_RS09850 (BV11031_09845)	fliF	1803096..1804703 (-)	1608	WP_010331102.1	flagellar basal-body MS-ring/collar protein FliF	-
BV11031_RS09855 (BV11031_09850)	fliE	1804749..1805069 (-)	321	WP_010331103.1	flagellar hook-basal body complex protein FliE	-
BV11031_RS09860 (BV11031_09855)	flgC	1805081..1805533 (-)	453	WP_010331104.1	flagellar basal body rod protein FlgC	-
BV11031_RS09865 (BV11031_09860)	flgB	1805533..1805922 (-)	390	WP_010331105.1	flagellar basal body rod protein FlgB	-
BV11031_RS09870 (BV11031_09865)	codY	1806306..1807085 (-)	780	WP_003238551.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
BV11031_RS09875 (BV11031_09870)	hslU	1807125..1808528 (-)	1404	WP_010331107.1	HslU--HslV peptidase ATPase subunit	-
BV11031_RS09880 (BV11031_09875)	clpQ	1808545..1809090 (-)	546	WP_010331108.1	ATP-dependent protease subunit ClpQ	-
BV11031_RS09885 (BV11031_09880)	xerC	1809103..1810017 (-)	915	WP_010331109.1	tyrosine recombinase XerC	-
BV11031_RS09890 (BV11031_09885)	trmFO	1810084..1811391 (-)	1308	WP_010331110.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29036.26 Da
• Isoelectric Point: 4.7210

>NTDB_id=268826 BV11031_RS09870 WP_003238551.1 1806306..1807085(-) (codY) [Bacillus vallismortis strain DSM 11031]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFHDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=268826 BV11031_RS09870 WP_003238551.1 1806306..1807085(-) (codY) [Bacillus vallismortis strain DSM 11031]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTGAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGACGTAATCGATTCCAATATTTTCGTTGTAAGCCGCAGAGGCAAACTCCTTGGATATTCTATTA
ACCAGCAAATCGAAAATGATCGTATGAAAAAAATGCTTGAAGATCGTCAATTCCCTGAAGAGTATACAAAAAATCTGTTT
AATGTGCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACCGCTTTCCCTGTTGAGAACAGAGACCTGTTCCA
GGCTGGCTTAACAACAATCGTACCGATCATCGGAGGCGGAGAAAGATTAGGAACGCTCATTCTTTCACGTTTACAGGATC
AATTTCATGACGATGATTTAATTCTCGCAGAATACGGTGCAACTGTTGTCGGAATGGAAATCTTGCGAGAAAAAGCAGAA
GAAATCGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCCATCAGCTCTCTTTCTTATAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTTGACGGAAACGAAGGCCTGCTCGTTGCAAGTAAAATCGCAGACCGCGTCGGCATTACCC
GTTCTGTTATTGTTAACGCACTGAGAAAGCTGGAAAGCGCCGGTGTCATCGAGTCAAGATCATTAGGAATGAAAGGGACT
TATATTAAAGTCCTTAACAACAAATTCCTAATTGAATTAGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.614	100	0.996
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467