Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   BV11031_RS04220 Genome accession   NZ_CP026362
Coordinates   784780..787140 (+) Length   786 a.a.
NCBI ID   WP_010331009.1    Uniprot ID   -
Organism   Bacillus vallismortis strain DSM 11031     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 779780..792140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV11031_RS04200 (BV11031_04190) comN 781100..781396 (+) 297 WP_010331013.1 post-transcriptional regulator ComN -
  BV11031_RS04205 (BV11031_04195) secDF 781435..783648 (+) 2214 WP_010331012.1 protein translocase subunit SecDF -
  BV11031_RS04210 (BV11031_04200) - 783807..784304 (+) 498 WP_010331011.1 cation:proton antiporter regulatory subunit -
  BV11031_RS04215 (BV11031_04205) - 784381..784713 (+) 333 WP_010331010.1 lipopolysaccharide assembly LapA domain-containing protein -
  BV11031_RS04220 (BV11031_04210) recJ 784780..787140 (+) 2361 WP_010331009.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  BV11031_RS04225 (BV11031_04215) - 787146..787658 (+) 513 WP_010331008.1 adenine phosphoribosyltransferase -
  BV11031_RS04230 (BV11031_04220) relA 787826..790030 (+) 2205 WP_010331007.1 GTP diphosphokinase -
  BV11031_RS04235 (BV11031_04225) dtd 790043..790483 (+) 441 WP_010331006.1 D-aminoacyl-tRNA deacylase -
  BV11031_RS04240 (BV11031_04230) - 790509..792062 (-) 1554 WP_010331005.1 SH3 domain-containing protein -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88198.57 Da        Isoelectric Point: 4.8519

>NTDB_id=268806 BV11031_RS04220 WP_010331009.1 784780..787140(+) (recJ) [Bacillus vallismortis strain DSM 11031]
MLASKMRWEIQRPDQDKVKSLTEQLHITPLVASLLVKRGFDTAESASLFLHTKDADFYDPFEMKGMKEAADRIKQAISQQ
EQIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRFKEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEANVAKEL
GLDVIITDHHEPGPELPDVHAIVHPKQPGCTYPYKELAGVGVAFKLAHALLGELPDELLDLAAIGTIADLVPLHDENRLI
ATLGLERLRRTNRLGLQELIKLSGGDLGEANEETVGFQLAPRLNAVGRIEQADPAVHLLMSEDQLEAEELAAEIDQLNKE
RQKMVSKMTDEAIEMVEQQNLDQTAIVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFES
LSECRDILPHFGGHPMAAGMTLNAEDVPDLRNRLNELAENTLTEEDFIPVQEVDLVCGVEDITVDSITEMNLLSPFGMLN
PKPHVLVENAVLEDVRKIGANKNHVKMTVKNESSQLDCVGFHKGELEEGIVPGSRISIVGEMSINEWNNRKKPQLMIKDA
AVSEWQLFDLRGKRMWEDTVSALPSAKRAIVSFKEDSTTLLEDEDLHREVHVISSEDQAKAFDLDGAYIVLLDPPPSLDM
LTHLLEGKAPERIYFIFLNHEDHFLSAFPARDYFKWYYAFLLKRGSFDVKKHGSELARHKGWSIETINFMTKVFFDLGFV
KIENGVLSVVSGVKKRDLTDSQTYQEKKQLMELDQKLNYSSAEELKEWLNKLMKKDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=268806 BV11031_RS04220 WP_010331009.1 784780..787140(+) (recJ) [Bacillus vallismortis strain DSM 11031]
ATGTTAGCATCAAAAATGCGATGGGAAATCCAGCGACCAGATCAGGATAAGGTCAAATCACTCACAGAACAATTGCATAT
CACACCTCTTGTTGCGTCCCTGCTTGTAAAAAGAGGCTTTGATACAGCAGAAAGCGCAAGCCTGTTTTTACATACAAAGG
ATGCCGATTTTTATGATCCGTTTGAAATGAAGGGCATGAAAGAAGCGGCAGATCGAATAAAACAGGCGATATCACAACAA
GAACAGATTATGATATATGGCGATTATGATGCCGATGGAGTTACCAGTACCTCAGTGATGCTCCATACACTGCAAAAGCT
GTCGGCTCAAGTTGATTTTTATATACCTGACCGCTTTAAAGAAGGCTATGGCCCTAATGAACAGGCGTTTCGTTCGATTA
AAGAACGAGGCTTCTCTCTGATTATTACGGTTGATACAGGGATTGCCGCTGTGCATGAAGCAAATGTGGCCAAGGAACTC
GGGCTGGATGTTATCATTACAGATCACCATGAGCCGGGGCCGGAGCTTCCGGATGTTCACGCGATTGTCCACCCGAAGCA
GCCGGGCTGTACCTACCCGTATAAAGAACTGGCCGGAGTCGGAGTTGCGTTTAAGCTTGCCCACGCTTTATTGGGCGAAC
TTCCAGATGAACTGCTTGACCTGGCAGCGATCGGCACGATTGCTGACCTTGTCCCGCTGCATGACGAAAACAGATTAATT
GCAACACTGGGACTTGAAAGGCTTCGGCGGACGAATCGGCTGGGCTTACAAGAGCTGATCAAGCTGTCAGGCGGAGACCT
TGGAGAAGCGAACGAAGAAACTGTCGGGTTCCAGCTTGCACCAAGGCTGAATGCCGTCGGGAGAATCGAACAGGCGGATC
CCGCTGTCCATTTGCTTATGTCAGAGGATCAGTTAGAAGCGGAAGAGCTTGCCGCTGAAATTGACCAGCTAAACAAAGAG
CGCCAAAAAATGGTTAGCAAGATGACGGATGAAGCGATTGAAATGGTTGAACAGCAAAATCTCGACCAAACTGCAATCGT
CGTGGCCAAAGCCGGGTGGAACCCAGGTGTCGTCGGGATTGTGGCTTCAAAGCTTGTGGACCGATTCTATCGTCCGGCCA
TTGTGCTTGGCATTGATGAAGAAAAAGGGATTGCTAAAGGTTCGGCCCGGAGCATCAGAGGCTTTAATTTATTCGAGAGC
CTTTCTGAATGCAGAGATATTCTTCCGCATTTCGGCGGCCATCCAATGGCGGCGGGGATGACGCTGAATGCCGAAGATGT
GCCGGATTTGCGGAACAGGCTGAATGAACTAGCGGAAAACACGCTTACGGAAGAGGATTTTATTCCTGTACAGGAAGTTG
ATCTCGTCTGCGGTGTCGAGGACATTACGGTTGACAGCATTACAGAAATGAACCTGCTGTCCCCCTTTGGGATGCTGAAC
CCGAAACCGCACGTTCTCGTGGAAAACGCTGTGCTGGAAGATGTCCGCAAGATCGGCGCGAATAAAAATCATGTAAAAAT
GACGGTCAAAAACGAGTCGTCTCAGCTTGATTGCGTCGGTTTTCATAAAGGTGAGCTTGAAGAAGGCATTGTCCCCGGCT
CAAGAATTTCAATTGTCGGTGAGATGTCTATCAACGAATGGAACAATAGAAAAAAACCGCAGCTAATGATTAAGGATGCC
GCTGTTTCTGAATGGCAGCTGTTTGATTTAAGGGGAAAACGGATGTGGGAAGACACAGTTTCCGCCCTTCCATCTGCTAA
ACGGGCTATTGTTTCTTTCAAAGAAGATTCAACAACACTTCTTGAGGATGAAGACCTTCACCGCGAAGTGCACGTCATTA
GCTCTGAAGATCAAGCGAAGGCGTTTGATCTCGATGGTGCTTATATTGTACTGCTGGATCCGCCGCCTTCCTTGGACATG
CTCACACATTTGCTGGAAGGCAAGGCGCCCGAGCGGATATATTTTATTTTTCTCAATCATGAGGACCACTTTTTATCAGC
TTTTCCCGCAAGAGACTACTTTAAATGGTATTATGCGTTTCTTCTGAAAAGGGGTTCTTTCGACGTGAAAAAACACGGTT
CAGAGCTTGCGAGGCATAAAGGCTGGTCAATAGAAACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTT
AAAATAGAGAATGGTGTGCTGTCTGTGGTTAGCGGAGTGAAAAAACGCGACTTAACAGACTCACAAACATATCAGGAGAA
GAAGCAGCTGATGGAACTGGATCAAAAGCTGAATTATTCTTCTGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
AAAAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-437)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(453-559)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

95.165

100

0.952

Multiple sequence alignment