Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | C2841_RS02360 | Genome accession | NZ_CP026325 |
| Coordinates | 475879..476142 (+) | Length | 87 a.a. |
| NCBI ID | WP_001177716.1 | Uniprot ID | T0EUE0 |
| Organism | Helicobacter pylori strain dRdM1 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 470879..481142
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2841_RS02335 (C2841_02345) | - | 473448..474116 (+) | 669 | WP_001862498.1 | AAA family ATPase | - |
| C2841_RS02340 (C2841_02350) | - | 474094..474881 (+) | 788 | Protein_434 | integrase | - |
| C2841_RS02345 (C2841_02355) | - | 474884..475114 (+) | 231 | WP_000189081.1 | hypothetical protein | - |
| C2841_RS02350 (C2841_02360) | - | 475107..475586 (+) | 480 | WP_000593414.1 | hypothetical protein | - |
| C2841_RS02355 (C2841_02365) | comB2 | 475583..475867 (+) | 285 | WP_000736478.1 | TrbC/VirB2 family protein | Machinery gene |
| C2841_RS02360 (C2841_02370) | comB3 | 475879..476142 (+) | 264 | WP_001177716.1 | hypothetical protein | Machinery gene |
| C2841_RS02365 (C2841_02375) | - | 476154..476390 (+) | 237 | WP_001168532.1 | hypothetical protein | - |
| C2841_RS02370 (C2841_02380) | - | 476390..478966 (+) | 2577 | WP_000893960.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| C2841_RS08395 (C2841_02385) | - | 478963..479103 (+) | 141 | WP_000789926.1 | hypothetical protein | - |
| C2841_RS02380 (C2841_02390) | - | 479096..479581 (+) | 486 | Protein_442 | hypothetical protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9970.83 Da Isoelectric Point: 5.7206
>NTDB_id=268189 C2841_RS02360 WP_001177716.1 475879..476142(+) (comB3) [Helicobacter pylori strain dRdM1]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=268189 C2841_RS02360 WP_001177716.1 475879..476142(+) (comB3) [Helicobacter pylori strain dRdM1]
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATACCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTACGCTTAA
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATACCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTACGCTTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
60.92 |
100 |
0.609 |