Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   C2841_RS00100 Genome accession   NZ_CP026325
Coordinates   13920..14183 (+) Length   87 a.a.
NCBI ID   WP_000584956.1    Uniprot ID   -
Organism   Helicobacter pylori strain dRdM1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8920..19183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2841_RS00070 (C2841_00070) groES 9205..9561 (-) 357 WP_000671934.1 co-chaperone GroES -
  C2841_RS00080 (C2841_00080) dnaG 9848..11527 (+) 1680 WP_000601638.1 DNA primase -
  C2841_RS00085 (C2841_00085) - 11524..12576 (+) 1053 WP_000721203.1 MnmA/TRMU family protein -
  C2841_RS00090 (C2841_00090) - 12665..13492 (+) 828 WP_001154906.1 DUF5718 family protein -
  C2841_RS00095 (C2841_00095) comB2 13639..13920 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  C2841_RS00100 (C2841_00100) comB3 13920..14183 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  C2841_RS00105 (C2841_00105) comB4 14185..16548 (+) 2364 WP_000890508.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  C2841_RS00115 (C2841_00115) - 16869..18209 (+) 1341 WP_015056018.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10006.08 Da        Isoelectric Point: 9.5290

>NTDB_id=268178 C2841_RS00100 WP_000584956.1 13920..14183(+) (comB3) [Helicobacter pylori strain dRdM1]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=268178 C2841_RS00100 WP_000584956.1 13920..14183(+) (comB3) [Helicobacter pylori strain dRdM1]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCAGATATTATCGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment