Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   C1N50_RS15730 Genome accession   NZ_CP026321
Coordinates   3293417..3294142 (+) Length   241 a.a.
NCBI ID   WP_103413697.1    Uniprot ID   -
Organism   Vibrio campbellii strain BoB-53     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3288417..3299142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N50_RS15715 (C1N50_15710) - 3289542..3291863 (+) 2322 WP_103413696.1 Tex family protein -
  C1N50_RS15720 (C1N50_15715) - 3291968..3292432 (-) 465 WP_005430182.1 hypothetical protein -
  C1N50_RS15725 (C1N50_15720) bioH 3292568..3293332 (-) 765 WP_038890229.1 pimeloyl-ACP methyl ester esterase BioH -
  C1N50_RS15730 (C1N50_15725) comF 3293417..3294142 (+) 726 WP_103413697.1 ComF family protein Machinery gene
  C1N50_RS15735 (C1N50_15730) nfuA 3294240..3294824 (+) 585 WP_005430072.1 Fe-S biogenesis protein NfuA -
  C1N50_RS15740 (C1N50_15735) nudE 3295000..3295566 (+) 567 WP_005430103.1 ADP compounds hydrolase NudE -
  C1N50_RS15745 (C1N50_15740) cysQ 3295614..3296441 (+) 828 WP_005430183.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  C1N50_RS15750 (C1N50_15745) - 3296732..3297493 (-) 762 WP_103413698.1 type II secretion system protein N -
  C1N50_RS15755 (C1N50_15750) - 3297495..3297986 (-) 492 WP_005430160.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27543.69 Da        Isoelectric Point: 8.2936

>NTDB_id=268144 C1N50_RS15730 WP_103413697.1 3293417..3294142(+) (comF) [Vibrio campbellii strain BoB-53]
MLSHQWQNIMHRVLSSQCGLCRFPIPQRQTPNLMRWCDSCFDQLTPIERCVRCGLKITGEESQAAKECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEVWHVGALTQLLAERVEQPAPVITSVPVHWQRLLKRGFNQSHILAKHLAHHLDVRYEN
KVFKRVKNVQSQRGNKKASREQNLQGAFALQGEVDFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=268144 C1N50_RS15730 WP_103413697.1 3293417..3294142(+) (comF) [Vibrio campbellii strain BoB-53]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATACCTCA
ACGCCAAACGCCCAACCTAATGCGTTGGTGTGATAGCTGTTTTGACCAACTCACACCAATTGAGCGCTGCGTACGTTGTG
GTTTAAAAATAACAGGAGAGGAATCACAAGCCGCCAAAGAGTGTGGAGAATGCCTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTAGGGGATTATGACTTCCCGCTCTCTCAACAAGTACAGCGTTTTAAAGATCATGGCGAAGTCTGGCATGT
GGGCGCGCTCACTCAATTATTAGCAGAGCGAGTTGAGCAGCCTGCCCCAGTGATTACAAGTGTGCCCGTTCACTGGCAGC
GCCTCTTAAAACGAGGTTTCAACCAGAGCCACATCTTGGCCAAACACCTCGCCCATCATTTAGATGTGCGCTATGAAAAC
AAGGTATTTAAACGCGTCAAAAACGTCCAATCACAACGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATTTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGGACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCGCCCGGTTCG
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

97.095

100

0.971
  comF Vibrio cholerae strain A1552

47.059

98.755

0.465

Multiple sequence alignment