Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   C1N51_RS05915 Genome accession   NZ_CP026315
Coordinates   1251244..1251969 (+) Length   241 a.a.
NCBI ID   WP_103410349.1    Uniprot ID   -
Organism   Vibrio campbellii strain BoB-90     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1246244..1256969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N51_RS05900 (C1N51_05900) - 1247350..1249671 (+) 2322 WP_103410347.1 Tex family protein -
  C1N51_RS05905 (C1N51_05905) - 1249796..1250260 (-) 465 WP_005430182.1 hypothetical protein -
  C1N51_RS05910 (C1N51_05910) bioH 1250395..1251159 (-) 765 WP_199770588.1 pimeloyl-ACP methyl ester esterase BioH -
  C1N51_RS05915 (C1N51_05915) comF 1251244..1251969 (+) 726 WP_103410349.1 ComF family protein Machinery gene
  C1N51_RS05920 (C1N51_05920) nfuA 1252067..1252651 (+) 585 WP_005430072.1 Fe-S biogenesis protein NfuA -
  C1N51_RS05925 (C1N51_05925) nudE 1252827..1253393 (+) 567 WP_005430103.1 ADP compounds hydrolase NudE -
  C1N51_RS05930 (C1N51_05930) cysQ 1253441..1254268 (+) 828 WP_005430183.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  C1N51_RS05935 (C1N51_05935) - 1254559..1255320 (-) 762 WP_010650510.1 type II secretion system protein N -
  C1N51_RS05940 (C1N51_05940) - 1255322..1255813 (-) 492 WP_199770604.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27718.91 Da        Isoelectric Point: 8.4394

>NTDB_id=268072 C1N51_RS05915 WP_103410349.1 1251244..1251969(+) (comF) [Vibrio campbellii strain BoB-90]
MLSHQWQNIMHRVLSSQCGLCRFPMPHRQTPNLMRWCDSCFDHLTPIQRCVRCGLKMTEKESQAATECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEVWHVGALTQLLAERVEQPAPVITSVPVHWQRFLKRGFNQSHILAKHLSHHLDVRYEN
KVFKRVKNVQSQRGNKKASREQNLQGAFALQGEVDFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPVPGS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=268072 C1N51_RS05915 WP_103410349.1 1251244..1251969(+) (comF) [Vibrio campbellii strain BoB-90]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATGCCTCA
CCGCCAAACACCCAACCTAATGCGTTGGTGTGATAGCTGTTTTGACCATCTCACACCAATCCAACGCTGCGTACGTTGTG
GTTTAAAAATGACAGAAAAGGAATCACAAGCCGCCACAGAGTGTGGAGAATGCCTGAAAGAACCACCACCATGGCGGCGT
TTGTATACCTTGGGTGATTATGACTTCCCGCTCTCTCAACAAGTACAGCGTTTTAAAGATCACGGCGAAGTCTGGCATGT
GGGCGCGCTCACTCAATTATTAGCAGAGCGAGTTGAGCAGCCTGCCCCAGTGATTACAAGTGTGCCCGTTCACTGGCAGC
GCTTCTTAAAACGAGGTTTCAACCAGAGCCACATCTTGGCCAAACACCTCTCCCATCATTTAGATGTGCGCTATGAAAAC
AAGGTATTTAAACGCGTCAAAAACGTCCAATCACAACGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATTTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGGACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACAGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGTGCCCGGTTCG
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

96.68

100

0.967
  comF Vibrio cholerae strain A1552

46.639

98.755

0.461

Multiple sequence alignment