Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NWMN_RS06565 Genome accession   NC_009641
Coordinates   1279662..1280435 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus subsp. aureus str. Newman     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1274662..1285435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWMN_RS06545 (NWMN_1161) trmFO 1275006..1276313 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  NWMN_RS06550 (NWMN_1162) xerC 1276730..1277626 (+) 897 WP_001015597.1 tyrosine recombinase XerC -
  NWMN_RS06555 (NWMN_1163) hslV 1277623..1278168 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  NWMN_RS06560 (NWMN_1164) hslU 1278234..1279637 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  NWMN_RS06565 (NWMN_1165) codY 1279662..1280435 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NWMN_RS06570 - 1280486..1280578 (+) 93 WP_001790530.1 hypothetical protein -
  NWMN_RS06575 (NWMN_1166) rpsB 1280777..1281544 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  NWMN_RS06580 - 1281578..1281691 (+) 114 WP_001789890.1 hypothetical protein -
  NWMN_RS06585 (NWMN_1167) tsf 1281726..1282607 (+) 882 WP_000201385.1 translation elongation factor Ts -
  NWMN_RS06590 (NWMN_1168) pyrH 1282744..1283466 (+) 723 WP_000057329.1 UMP kinase -
  NWMN_RS06595 (NWMN_1169) frr 1283485..1284039 (+) 555 WP_001280006.1 ribosome recycling factor -
  NWMN_RS06600 (NWMN_1170) - 1284412..1285182 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=26800 NWMN_RS06565 WP_000055337.1 1279662..1280435(+) (codY) [Staphylococcus aureus subsp. aureus str. Newman]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=26800 NWMN_RS06565 WP_000055337.1 1279662..1280435(+) (codY) [Staphylococcus aureus subsp. aureus str. Newman]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment