Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LWE_RS07665 Genome accession   NC_008555
Coordinates   1517388..1519784 (-) Length   798 a.a.
NCBI ID   WP_011702312.1    Uniprot ID   -
Organism   Listeria welshimeri serovar 6b str. SLCC5334     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1512388..1524784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LWE_RS07645 (lwe1518) - 1512866..1513561 (-) 696 WP_011702308.1 ABC transporter ATP-binding protein -
  LWE_RS07650 (lwe1519) - 1513570..1515069 (-) 1500 WP_011702309.1 ABC transporter permease -
  LWE_RS07655 (lwe1520) pieR 1515236..1515922 (+) 687 WP_011702310.1 two component system response regulator PieR -
  LWE_RS07660 (lwe1521) pieS 1515919..1517358 (+) 1440 WP_011702311.1 two component system sensor histidine kinase PieS -
  LWE_RS07665 (lwe1522) recD2 1517388..1519784 (-) 2397 WP_011702312.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LWE_RS07670 (lwe1523) - 1519807..1520445 (-) 639 WP_077904745.1 tetratricopeptide repeat protein -
  LWE_RS07675 (lwe1524) - 1520489..1521229 (-) 741 WP_011702314.1 alpha/beta hydrolase -
  LWE_RS07680 (lwe1525) mnmA 1521346..1522461 (-) 1116 WP_011702315.1 tRNA 2-thiouridine(34) synthase MnmA -
  LWE_RS07685 (lwe1526) - 1522480..1523628 (-) 1149 WP_011702316.1 cysteine desulfurase family protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90218.39 Da        Isoelectric Point: 4.8174

>NTDB_id=26772 LWE_RS07665 WP_011702312.1 1517388..1519784(-) (recD2) [Listeria welshimeri serovar 6b str. SLCC5334]
MAEQESLALFDDTPEELFMKGTMLSTIFYNAENLFSVVRILVKETNADWDEKDIIVTGFFPALHEQEVYTFYGKMQEHAK
FGQQFKADRFRKEMPQSRAGLINYLSGELFKGIGKVTAENIVDTIGDDAITKILSDPSLLNTVPKLPSGAAESLLASLRE
NQGLEHVMVGLNEYGFGPQLSMKIFQVYKQNAIEVLENNPYKLIEDVKGIGFQRADELGRKLGLGGNHPERLRAGVLFML
DSVCMQQGHVYMEKEVLLGEVTYLLEESEGIRIDQAILLQQVEKLAEEQKIITENTRVYMPSLYYSESGFAYHVKRMLKQ
TEYQEQFPQSEFLLALGELEERIGVHYGDSQREALEQALMSPMLVLTGGPGTGKTTVIKGIVELYAELNGLSLDPHAYKD
GATFPVLLAAPTGRAAKRMSESTGLPAMTIHRLLGMNGQEQMDDDAERLIDGRLLIVDEMSMVDIWLANQLFRALPAHMQ
VVLVGDQDQLPSVGPGQVLKDILHSEQIPTVALSDIYRQKDGSSIIEMAHYIKEGMLPTDFAKNSADRSFFHCTVNQIGD
VVEQVVKNAKNKGFRAKDIQVLAPMYRGPAGIDILNKKLQEIFNPNDTGRRKEVQFGEIKYRVHDKVLQLINQPEKNVFN
GDIGEIVSIIYAKENTEKQDLIVVQFDQTEVSYYRQEFNQLTHAYCCSIHKAQGSEFPIVIMPIVRSYYRMLRRDLLYTG
VTRSKQFLILCGEEEAFRMGVERVDENKRNTTLSERLMSEDVMLEQMTNKRILTTENITEIDPMIGMEGITPEQFMVG

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=26772 LWE_RS07665 WP_011702312.1 1517388..1519784(-) (recD2) [Listeria welshimeri serovar 6b str. SLCC5334]
ATGGCAGAACAAGAATCTCTTGCCTTATTTGACGATACACCAGAAGAACTTTTTATGAAAGGCACGATGCTGTCTACCAT
TTTTTATAATGCCGAAAACCTCTTTTCTGTGGTACGGATTTTAGTTAAAGAAACCAATGCGGACTGGGATGAAAAAGACA
TTATTGTGACTGGTTTTTTTCCTGCGCTTCATGAACAAGAAGTATATACTTTTTATGGGAAAATGCAGGAACATGCTAAA
TTTGGTCAACAGTTTAAAGCAGATAGATTTCGAAAAGAAATGCCTCAATCTCGTGCCGGATTAATTAATTATCTTTCTGG
TGAACTTTTTAAAGGAATTGGCAAGGTCACAGCAGAAAATATTGTTGACACAATTGGTGATGATGCTATTACAAAAATAT
TATCAGATCCAAGTTTACTAAATACTGTTCCCAAATTGCCATCAGGTGCTGCGGAAAGTTTGCTTGCTTCCCTTAGAGAA
AATCAAGGTCTAGAACATGTCATGGTTGGTTTGAATGAATACGGTTTTGGTCCGCAATTATCAATGAAAATTTTTCAAGT
ATATAAACAAAATGCTATTGAAGTTTTAGAAAATAATCCGTATAAGCTAATTGAAGATGTAAAAGGGATCGGATTTCAGC
GTGCCGATGAGCTTGGACGAAAACTGGGGCTCGGTGGGAATCATCCAGAACGCCTTCGTGCAGGTGTTTTATTTATGCTA
GATTCTGTTTGTATGCAACAAGGTCATGTGTATATGGAAAAAGAGGTTTTGCTTGGTGAAGTAACTTATTTGCTTGAAGA
AAGTGAAGGCATCAGGATTGACCAAGCTATTTTATTACAACAAGTGGAAAAGCTCGCAGAAGAACAAAAAATCATCACTG
AAAATACTCGTGTATACATGCCGTCACTATACTATTCAGAAAGCGGTTTTGCTTATCATGTAAAACGGATGTTAAAGCAA
ACCGAATATCAAGAACAATTTCCGCAATCTGAGTTTTTATTAGCACTTGGAGAATTGGAAGAACGTATTGGAGTACATTA
CGGAGATTCTCAGCGTGAAGCGTTAGAACAAGCACTAATGTCGCCAATGTTAGTTTTGACTGGTGGACCTGGTACTGGGA
AAACAACTGTTATAAAAGGGATTGTGGAACTCTACGCGGAATTAAATGGCCTAAGCCTTGATCCGCACGCGTATAAAGAT
GGTGCTACTTTTCCAGTGTTACTTGCTGCGCCAACAGGTCGGGCAGCTAAACGGATGTCTGAATCTACCGGTCTTCCAGC
AATGACCATTCACCGTTTACTTGGAATGAATGGACAAGAACAAATGGATGACGATGCCGAAAGATTAATTGATGGTCGGC
TTTTAATTGTAGATGAAATGTCAATGGTTGATATTTGGCTTGCGAATCAATTATTCCGAGCCTTACCAGCTCATATGCAA
GTAGTACTAGTTGGCGACCAAGACCAGCTTCCATCAGTTGGACCTGGCCAAGTTTTGAAAGATATTCTACATTCAGAGCA
AATTCCAACTGTCGCTCTCTCAGATATTTATCGTCAAAAAGATGGTTCATCCATTATTGAAATGGCCCATTATATTAAAG
AAGGGATGCTACCAACTGATTTTGCGAAAAATAGTGCAGATCGCTCGTTTTTCCACTGTACAGTAAACCAGATTGGGGAT
GTAGTTGAACAAGTCGTAAAAAATGCTAAAAATAAAGGTTTCCGCGCAAAAGATATTCAAGTGTTAGCACCGATGTATCG
CGGACCAGCAGGAATTGATATTTTAAATAAAAAGTTGCAAGAAATTTTCAATCCTAATGATACCGGCCGCCGCAAAGAAG
TACAATTCGGGGAAATTAAGTATCGGGTTCACGACAAGGTACTGCAATTAATTAATCAACCTGAAAAGAACGTTTTTAAC
GGGGATATTGGTGAAATAGTTTCGATAATCTATGCGAAAGAAAATACTGAAAAACAAGATTTGATTGTGGTTCAATTTGA
TCAAACGGAGGTTTCTTATTACAGACAAGAATTTAATCAATTAACCCATGCTTATTGTTGTTCGATTCATAAAGCCCAAG
GGAGCGAGTTTCCAATTGTGATTATGCCAATTGTGCGCAGTTATTATCGAATGTTACGCCGTGATTTACTTTATACAGGA
GTGACAAGAAGTAAACAATTCCTTATCCTGTGCGGAGAAGAAGAAGCTTTTCGAATGGGCGTAGAGCGTGTGGATGAAAA
CAAACGAAATACAACCCTCTCTGAACGTTTAATGAGCGAAGATGTAATGCTAGAACAAATGACGAATAAACGCATATTAA
CGACGGAAAATATTACAGAAATTGATCCTATGATTGGAATGGAAGGGATTACCCCAGAACAATTTATGGTAGGATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(347-554)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)

Helix-hairpin-helix containing domain (HHH_RecD2)

(160-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.98

98.747

0.563

Multiple sequence alignment