Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   HLI_RS18440 Genome accession   NZ_CP026118
Coordinates   3737909..3740233 (+) Length   774 a.a.
NCBI ID   WP_128526369.1    Uniprot ID   A0A410MHD1
Organism   Halobacillus litoralis strain ERB 031     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3732909..3745233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLI_RS18415 (HLI_18695) - 3733781..3734464 (+) 684 WP_128526364.1 YitT family protein -
  HLI_RS18420 (HLI_18700) - 3734418..3734837 (+) 420 WP_128526365.1 Rrf2 family transcriptional regulator -
  HLI_RS18425 (HLI_18705) - 3734856..3735998 (+) 1143 WP_128526366.1 cysteine desulfurase family protein -
  HLI_RS18430 (HLI_18710) mnmA 3736014..3737126 (+) 1113 WP_128526367.1 tRNA 2-thiouridine(34) synthase MnmA -
  HLI_RS18435 (HLI_18715) - 3737229..3737888 (+) 660 WP_128526368.1 tetratricopeptide repeat protein -
  HLI_RS18440 (HLI_18720) recD2 3737909..3740233 (+) 2325 WP_128526369.1 ATP-dependent RecD-like DNA helicase Machinery gene
  HLI_RS18445 (HLI_18725) - 3740246..3741058 (+) 813 WP_128526370.1 TIM barrel protein -
  HLI_RS21800 - 3741114..3741290 (+) 177 WP_164908601.1 hypothetical protein -
  HLI_RS18450 (HLI_18730) - 3741297..3742364 (+) 1068 WP_128526371.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 774 a.a.        Molecular weight: 88421.05 Da        Isoelectric Point: 4.7539

>NTDB_id=267299 HLI_RS18440 WP_128526369.1 3737909..3740233(+) (recD2) [Halobacillus litoralis strain ERB 031]
MTQQSLFDESNEERPYVKGELGRMIFHNESEHFSIATINVKETNEAFEEKSLVVKGHFSPLEEGETYIFYGEFKNHKKFG
LQYEVVMYNRVLPETKDGIVLYLSSDLFHGIGKKTAERIVDELGEQAISLILENRDVLDTVPKLAKEKADHLYQSLKEHQ
GFEHVMIHLSQYGFGLKLAQKIYQAFQDQTMNIIEEDPYQLVFHVEGFGFHRADEMARMQNLSHDHPTRIRAACLYIMQK
SMSSGHVYLPTEECLVQVEQLLNQGLDPTISFDQLSEQVIHLGEEKFIYIEEDRLYLPSLYFAENGFRSHIERIIENGVE
VEHTQADLMKIIGQLEEEESMSYGEDQFNAIEKALHSKLMILTGGPGTGKTTVIKGIIQTYAELNEESIDPEEYDGEKPF
PFILAAPTGRAAKRMTESTGLPASTIHRLLGWDGHDSFERNQNNPLEGKVLIVDEFSMVDIWLANQLFRAIPSDMQVLLV
GDEDQLPSVGPGQVLADLLASGQLPSIKLTEVYRQKEGSKIIQLAHEIKNDVCSPQSLVKEHDFNFIPAKEHQLSELVTN
IVKKAVDKGIDLKDLQVLAPMYRTEVGIHKLNQHIQQTINPKNKQKRDLTYYDVTYRKGDKVIQLVNQPEDGVYNGDIGE
IVAIFREEENVDNVEQVVIDFDGKEVVYPKKDLNNVMHAYCTSIHKSQGSEFSIVILPVVRSYRRMLRKNLLYTAITRSK
QSLIICGDREAFLDGVGTTDTNSRYTRLKEKLQEDSSPEVEEEEEEQLSPYDFM

Nucleotide


Download         Length: 2325 bp        

>NTDB_id=267299 HLI_RS18440 WP_128526369.1 3737909..3740233(+) (recD2) [Halobacillus litoralis strain ERB 031]
ATGACTCAACAATCACTCTTTGATGAATCGAATGAAGAACGTCCTTATGTTAAAGGGGAATTGGGGCGGATGATTTTTCA
CAATGAATCCGAGCATTTTTCTATTGCCACTATTAACGTCAAGGAGACAAATGAAGCGTTTGAAGAGAAAAGCCTTGTGG
TCAAAGGTCATTTTTCTCCTCTGGAAGAAGGCGAAACCTATATCTTTTATGGAGAGTTCAAAAACCATAAAAAATTCGGT
TTGCAATATGAAGTAGTCATGTATAATCGTGTTCTTCCTGAAACTAAAGATGGAATAGTCTTGTATTTATCGAGTGATCT
TTTTCATGGAATCGGTAAGAAGACAGCCGAACGTATCGTAGATGAGCTTGGTGAACAGGCGATTTCGCTTATTTTAGAAA
ATAGGGACGTGTTGGATACAGTACCTAAGCTGGCGAAGGAGAAGGCGGATCATCTTTATCAATCCTTGAAAGAACATCAA
GGCTTTGAGCATGTGATGATACACCTGTCTCAGTATGGATTCGGTTTAAAACTGGCTCAAAAAATATATCAGGCTTTCCA
GGATCAAACGATGAATATTATTGAAGAAGACCCTTATCAGCTTGTCTTTCATGTGGAAGGTTTCGGTTTCCACCGGGCAG
ACGAAATGGCAAGGATGCAAAACCTTTCCCATGACCATCCTACAAGAATCAGAGCGGCATGTCTTTACATTATGCAAAAA
AGTATGAGTTCAGGACATGTATATTTGCCGACTGAAGAATGTCTTGTCCAGGTTGAGCAGCTGTTGAATCAGGGGTTGGA
TCCAACCATTTCATTTGACCAGCTTTCAGAGCAAGTGATTCATCTGGGCGAAGAGAAATTTATTTACATTGAAGAAGACC
GTCTTTATCTTCCCTCTCTTTACTTTGCAGAAAATGGATTTCGCAGCCATATCGAACGGATTATAGAAAATGGAGTCGAA
GTAGAGCATACTCAAGCAGATTTGATGAAAATCATCGGACAACTGGAAGAGGAAGAATCGATGAGCTATGGTGAGGACCA
ATTCAATGCCATTGAAAAGGCTCTCCATTCAAAGCTGATGATATTGACAGGCGGCCCCGGTACAGGAAAGACTACGGTAA
TAAAAGGAATTATTCAAACGTATGCCGAACTCAATGAAGAATCAATCGACCCAGAAGAGTATGACGGGGAGAAACCTTTT
CCCTTTATTTTAGCCGCTCCGACAGGGAGAGCTGCAAAAAGGATGACCGAGTCTACAGGTTTGCCTGCGAGTACAATACA
CCGCTTGCTCGGCTGGGATGGCCATGATTCTTTTGAACGCAACCAAAACAACCCTTTAGAGGGTAAAGTGTTGATTGTAG
ATGAATTTTCAATGGTGGATATATGGCTTGCGAATCAACTGTTTCGAGCCATTCCATCGGATATGCAAGTCCTGCTCGTA
GGTGATGAAGACCAACTGCCTTCAGTAGGACCTGGACAAGTGTTGGCAGATCTCCTGGCATCTGGACAACTTCCGTCGAT
TAAGCTGACTGAAGTGTATCGACAAAAGGAAGGTTCGAAAATCATCCAGCTTGCCCATGAAATTAAAAATGATGTGTGCT
CACCTCAATCTCTTGTTAAAGAACATGATTTCAACTTTATTCCTGCAAAAGAACATCAATTGAGTGAACTAGTCACTAAT
ATAGTAAAAAAAGCAGTCGATAAAGGAATCGATTTGAAGGATTTGCAAGTGTTAGCACCTATGTACCGCACAGAGGTAGG
GATTCATAAACTCAATCAACATATCCAACAGACGATCAACCCCAAGAATAAGCAGAAAAGAGACCTGACTTACTATGATG
TCACTTATAGAAAAGGTGACAAAGTGATTCAATTGGTCAATCAACCAGAAGATGGAGTATACAACGGAGATATCGGTGAG
ATTGTTGCGATTTTCCGAGAAGAAGAAAACGTCGATAATGTGGAGCAAGTCGTGATAGATTTTGATGGTAAAGAGGTTGT
GTACCCAAAGAAAGATTTAAATAATGTCATGCACGCTTATTGCACTTCCATCCACAAATCTCAAGGTAGTGAATTCTCTA
TCGTGATTTTACCTGTCGTACGCAGCTACCGTCGCATGCTCAGGAAAAACCTTCTCTATACAGCGATCACACGTTCCAAA
CAGTCCTTGATTATTTGCGGTGATCGGGAGGCTTTCCTGGATGGGGTCGGTACAACAGATACAAACTCAAGGTATACCAG
ATTGAAAGAGAAACTCCAGGAAGATTCTTCGCCAGAGGTTGAGGAGGAAGAGGAAGAACAGCTTTCCCCCTATGATTTCA
TGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-248)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-661)

AAA domain (AAA_30)

(343-532)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-726)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A410MHD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.17

100

0.497

Multiple sequence alignment