Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SPD_RS11770 Genome accession   NC_008533
Coordinates   1717392..1718423 (-) Length   343 a.a.
NCBI ID   WP_000506414.1    Uniprot ID   A0A2U3RWR6
Organism   Streptococcus pneumoniae D39     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1712392..1723423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPD_RS09115 (SPD_1712) - 1712486..1713247 (-) 762 WP_001107755.1 SDR family NAD(P)-dependent oxidoreductase -
  SPD_RS09120 (SPD_1713) ytpR 1713280..1713906 (-) 627 WP_000578309.1 YtpR family tRNA-binding protein -
  SPD_RS09125 (SPD_1714) - 1713922..1714239 (-) 318 WP_000615767.1 thioredoxin family protein -
  SPD_RS09130 (SPD_1715) - 1714236..1714535 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  SPD_RS11940 - 1714629..1714760 (+) 132 WP_001811306.1 hypothetical protein -
  SPD_RS11765 - 1714785..1714847 (-) 63 WP_219300018.1 hypothetical protein -
  SPD_RS09135 (SPD_1716) - 1714872..1715063 (-) 192 WP_000291826.1 cell wall-binding protein -
  SPD_RS09140 (SPD_1717) - 1715224..1715898 (-) 675 WP_000725742.1 LiaF transmembrane domain-containing protein -
  SPD_RS09145 (SPD_1718) - 1715904..1716350 (-) 447 WP_000776587.1 LytTR family DNA-binding domain-containing protein -
  SPD_RS09150 (SPD_1719) - 1716464..1716967 (-) 504 WP_000800927.1 phosphatase PAP2 family protein -
  SPD_RS09155 (SPD_1720) - 1716964..1717326 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  SPD_RS11770 (SPD_1721) rcrQ 1717392..1718423 (-) 1032 WP_000506414.1 ABC transporter ATP-binding protein Regulator
  SPD_RS11775 (SPD_1722) - 1718430..1719251 (-) 822 Protein_1716 ABC transporter permease -
  SPD_RS09165 (SPD_1724) - 1719268..1719737 (-) 470 Protein_1717 MarR family winged helix-turn-helix transcriptional regulator -
  SPD_RS09175 (SPD_1725) - 1719861..1720577 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  SPD_RS09185 (SPD_1726) ply 1721458..1722873 (-) 1416 WP_001284359.1 cholesterol-dependent cytolysin pneumolysin -
  SPD_RS09190 (SPD_1727) - 1722884..1723294 (-) 411 WP_000595757.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37844.05 Da        Isoelectric Point: 4.4301

>NTDB_id=26715 SPD_RS11770 WP_000506414.1 1717392..1718423(-) (rcrQ) [Streptococcus pneumoniae D39]
MGFLLMGALFIVLPRTMVSAKRINQVLDLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTV
AFIGSTGSGKSTLVNLIPRFYDVSAGEILVDGVNVQDYDFSATAHAGQKVAIVGPTGAGKTTIVNLLMKFYEIDKGSIRI
DGVDTKAMTRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVG
QKQLLTIACALLKDASLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNYEE
LMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=26715 SPD_RS11770 WP_000506414.1 1717392..1718423(-) (rcrQ) [Streptococcus pneumoniae D39]
ATGGGCTTCCTTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
AGATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTGCAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGACAGCTCATGCTGGTCAAAAGGTTGCCATTGTTG
GGCCGACTGGGGCTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGGGAAGTATTCGCATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTT
TGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTG
TGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAGGA
CAAAAACAACTATTGACTATTGCTTGTGCCCTTCTTAAGGATGCATCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATCCTTTGTCATTGCCCACC
GCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAA
CTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(68-118)

ABC transporter (ABC_tran)

(120-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U3RWR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

80.357

65.306

0.525
  rcrP Streptococcus mutans UA159

37.572

100

0.379

Multiple sequence alignment