Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   BAOM_RS18150 Genome accession   NZ_CP026095
Coordinates   3680894..3683266 (-) Length   790 a.a.
NCBI ID   WP_127761488.1    Uniprot ID   A0A3T0KW22
Organism   Peribacillus asahii strain OM18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3675894..3688266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAOM_RS18135 (BAOM_3927) dtd 3677471..3677911 (-) 441 WP_127761486.1 D-aminoacyl-tRNA deacylase -
  BAOM_RS18140 (BAOM_3928) - 3677924..3680119 (-) 2196 WP_127761487.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  BAOM_RS18145 (BAOM_3929) - 3680391..3680903 (-) 513 WP_119117469.1 adenine phosphoribosyltransferase -
  BAOM_RS18150 (BAOM_3930) recJ 3680894..3683266 (-) 2373 WP_127761488.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  BAOM_RS18155 (BAOM_3931) secDF 3683409..3685661 (-) 2253 WP_127761489.1 protein translocase subunit SecDF -
  BAOM_RS18160 (BAOM_3932) - 3685854..3686156 (-) 303 WP_127761490.1 post-transcriptional regulator -
  BAOM_RS18165 (BAOM_3933) spoVB 3686287..3687852 (+) 1566 WP_127761491.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 790 a.a.        Molecular weight: 89277.38 Da        Isoelectric Point: 5.0652

>NTDB_id=267076 BAOM_RS18150 WP_127761488.1 3680894..3683266(-) (recJ) [Peribacillus asahii strain OM18]
MLKPKTRWNVQAADSNKITALVEQLHITPLVATLLVNRGLDDVEAARSFLYVKKQTFHDPFLLKDMDKTVHRIQEAIHRG
EKIRIFGDYDADGVTSTTVMMTTLKRLGAHVDFYIPNRFTEGYGPNEMAFRLAASESVQLLITVDTGIAAVAEAALAREL
GMDYIVTDHHEPGPELPEAFAIIHPKLEDSSYPFKELAGVGVAFKLAHALLGELPEDLLEIAAIGTIADLVPLIGENRLI
AAKGIEKMRQTRRPGLVSLMKVANIEQSSLTEESIGFSLAPRLNAAGRLGPADPAVDLLMAEDLLEAAELSEEINELNKE
RQAIVAEAVEEAIREVEEHYPLANNQVLIVGKEGWNSGIVGIVASKLVERYYRPTIVLSYDREKGLAKGSARSIAGFDLF
RNLSTCRELLPHFGGHPMAAGMTLQIDDVPELRMRLNQLAAEQLTAEDFIPVVSLDGAVHIEEASIQTIEEMSLLAPFGV
SNPKPKVLLDSVQLAGIRKIGANQNHLKFQFAEEDKQLDGVGFGLGHYADHIAPHAKVSVIGELSINEWNNMKKPQIFVK
DVAVDHWQLFDYRGKGQVEKWLTEILPTKRKIIVFSAETMKQYPFLQDYPDVMLIQTEQDVERIEGINSYLVLMDLPMSR
EILQKIIRNQQPERIYVHFFHQQDHFLSTMPTRDHFKWFYAFLAKKGPLDLGRYGDDLAAYRGWSRNTIDFISKVFFELD
FVTIDNGLIMLKTNAKKRELTDSISYQRKKEQFELEKELVYSSYQQLFDWFNQELIQEVIDLEEETKQWI

Nucleotide


Download         Length: 2373 bp        

>NTDB_id=267076 BAOM_RS18150 WP_127761488.1 3680894..3683266(-) (recJ) [Peribacillus asahii strain OM18]
ATGTTAAAGCCAAAAACGCGGTGGAATGTACAAGCCGCTGATTCAAATAAAATTACTGCACTAGTGGAACAGCTTCATAT
TACACCTCTAGTAGCAACGCTATTAGTTAATCGAGGCTTAGATGATGTCGAAGCTGCTCGATCTTTTTTATATGTAAAAA
AACAAACGTTTCATGACCCATTTCTATTAAAAGATATGGATAAAACTGTTCATCGTATACAAGAGGCGATTCACCGTGGC
GAGAAAATTCGCATATTCGGCGATTATGATGCGGATGGTGTCACATCGACAACGGTGATGATGACAACGCTAAAAAGACT
AGGCGCTCACGTAGATTTCTATATTCCTAATCGTTTTACAGAAGGATATGGGCCGAATGAGATGGCTTTTCGTCTTGCTG
CTAGTGAAAGCGTTCAGCTATTAATTACCGTTGATACAGGAATTGCTGCCGTAGCAGAAGCAGCACTTGCCCGTGAGCTT
GGGATGGATTATATTGTGACAGATCATCATGAACCAGGACCAGAGCTTCCAGAAGCATTCGCTATCATTCATCCAAAGTT
AGAAGATAGCAGCTATCCGTTCAAAGAATTAGCTGGAGTTGGGGTAGCATTCAAGCTTGCACATGCCCTGCTTGGAGAAC
TGCCGGAAGACTTACTAGAAATTGCTGCGATTGGAACGATTGCAGATTTAGTACCGTTGATTGGGGAAAATCGCTTGATT
GCTGCAAAAGGGATTGAAAAGATGCGCCAAACGAGAAGACCAGGTCTCGTTTCTTTAATGAAAGTAGCGAACATTGAGCA
AAGTTCGTTAACGGAAGAGTCGATTGGTTTTTCTTTGGCGCCGCGTTTAAATGCAGCCGGACGTTTAGGTCCTGCAGATC
CTGCTGTTGATTTATTAATGGCAGAAGATTTGTTAGAGGCAGCTGAGCTTTCAGAAGAAATTAATGAGCTCAATAAAGAA
CGTCAAGCAATTGTAGCAGAAGCAGTAGAGGAAGCGATTCGTGAAGTAGAAGAACATTATCCACTTGCTAATAATCAGGT
TCTGATTGTTGGGAAAGAGGGATGGAATTCAGGTATTGTAGGAATTGTCGCTTCAAAGCTTGTTGAGCGTTATTATCGAC
CGACAATCGTTCTAAGTTATGATCGAGAAAAAGGTTTAGCAAAAGGATCAGCACGCAGTATTGCTGGATTTGATTTATTT
CGGAATTTATCTACTTGTCGCGAATTATTACCTCATTTCGGAGGTCATCCAATGGCAGCCGGAATGACGTTACAAATTGA
TGATGTGCCCGAATTGCGTATGCGTTTAAATCAATTGGCGGCTGAACAATTAACAGCGGAAGATTTTATTCCTGTAGTGA
GCTTAGATGGAGCCGTACATATTGAAGAGGCTTCCATTCAAACAATTGAGGAAATGAGCTTATTAGCTCCATTTGGTGTC
AGCAATCCTAAACCGAAAGTTTTACTTGATTCTGTTCAGCTTGCAGGCATTCGAAAAATCGGTGCCAATCAAAATCATTT
AAAGTTCCAGTTTGCAGAGGAAGATAAGCAGCTTGATGGGGTGGGATTTGGCTTAGGACATTATGCTGATCATATTGCTC
CGCATGCCAAAGTGTCCGTTATTGGAGAACTTTCTATTAATGAATGGAATAATATGAAAAAGCCGCAAATTTTTGTGAAA
GATGTCGCTGTTGATCATTGGCAGCTATTTGATTATCGTGGTAAAGGGCAAGTGGAAAAGTGGTTAACGGAGATTTTGCC
AACGAAGCGAAAAATCATTGTTTTTTCGGCAGAGACGATGAAACAGTATCCGTTTTTGCAAGATTATCCAGATGTGATGT
TGATTCAAACGGAGCAGGATGTAGAGAGGATAGAAGGAATTAATAGCTATTTAGTATTGATGGACCTGCCAATGTCTCGC
GAGATTTTACAGAAAATCATTCGTAATCAACAACCAGAGCGGATTTATGTTCACTTTTTTCATCAACAAGATCATTTCTT
AAGTACGATGCCAACTCGGGACCATTTTAAATGGTTTTATGCATTTTTAGCGAAAAAAGGGCCGCTCGATTTAGGAAGAT
ATGGAGATGACCTTGCGGCATACCGTGGTTGGTCTCGAAATACAATTGATTTTATTTCTAAGGTGTTTTTTGAATTAGAT
TTTGTTACAATAGATAATGGATTAATTATGCTTAAAACCAATGCGAAAAAACGCGAACTAACTGATTCAATATCGTATCA
ACGAAAGAAAGAGCAATTTGAGCTTGAAAAAGAGCTTGTTTATTCTTCCTATCAGCAATTATTCGATTGGTTCAATCAAG
AATTAATTCAAGAGGTAATAGACCTTGAGGAGGAAACAAAGCAATGGATTTAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(456-561)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(307-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3T0KW22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.37

98.481

0.535

Multiple sequence alignment