Detailed information NTG0266035

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: DXG80_RS13585
• Genome accession: NZ_CP031500
• Coordinates: 2629807..2630982 (+)
• Length: 391 a.a.
• NCBI ID: WP_010887416.1
• Uniprot ID: Q9RW99
• Organism: Deinococcus radiodurans strain R1 dM1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2624807..2635982

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DXG80_RS13565 (DXG80_13585)	-	2625525..2626853 (+)	1329	WP_227086001.1	PQQ-binding-like beta-propeller repeat protein	-
DXG80_RS13570 (DXG80_13590)	-	2626880..2627359 (+)	480	WP_231885322.1	short-chain dehydrogenase	-
DXG80_RS13575 (DXG80_13595)	-	2627387..2628688 (+)	1302	WP_010887414.1	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	-
DXG80_RS13580 (DXG80_13600)	-	2628723..2629526 (+)	804	WP_010887415.1	hypothetical protein	-
DXG80_RS13585 (DXG80_13605)	pilM	2629807..2630982 (+)	1176	WP_010887416.1	type IV pilus biogenesis protein PilM	Machinery gene
DXG80_RS13590 (DXG80_13610)	-	2630975..2631691 (+)	717	WP_010887417.1	hypothetical protein	-
DXG80_RS13595 (DXG80_13615)	-	2631688..2632347 (+)	660	WP_010887418.1	type 4a pilus biogenesis protein PilO	-
DXG80_RS13600 (DXG80_13620)	-	2632344..2634251 (+)	1908	WP_027479985.1	hypothetical protein	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 42173.15 Da
• Isoelectric Point: 4.6785

>NTDB_id=266035 DXG80_RS13585 WP_010887416.1 2629807..2630982(+) (pilM) [Deinococcus radiodurans strain R1 dM1]
MTSLINRFRSRSAAIGVEIGTSTIKVVALKAGAPPSLQHAVMVPTPIGSMRDGLVVEPQAVASELKSLLAEHRITTRHAV
TAVPNQVAVTRNIMVPRMDRKDLQSAIRWEAERYIPYPIDEVTLDFDLLDDPANVPEDGQMEVVIAAAPTEAVHRQIEVL
RLAGLEPTVVDLKSFAALRALRGNLLGEHLTKSTLTGTNYTEAGEVALVMEIGASSSVINLVRGDRILMTRNINVSADDF
TTALQKAFDLDFAAAEDVKLGYATATTPTEDEEDLLNFDLSREQYSPARVFEVVRPVLGDLITEIRRSLEFYRVQSGDVV
IDRTFLAGGGAKLRGLAAAIGDALGFGVEVASPWLTVQTDQAGVDTGYLQTNAPEFTVPLGLALRGVMGRG

Nucleotide

• Length: 1176 bp

>NTDB_id=266035 DXG80_RS13585 WP_010887416.1 2629807..2630982(+) (pilM) [Deinococcus radiodurans strain R1 dM1]
ATGACGAGCCTCATTAACCGTTTTCGCAGTCGTTCCGCCGCCATCGGCGTGGAGATCGGCACCAGCACCATCAAGGTGGT
GGCCCTTAAGGCAGGGGCCCCGCCTTCCCTGCAACACGCGGTGATGGTCCCCACCCCCATCGGCAGCATGCGTGACGGTC
TGGTCGTCGAACCCCAGGCAGTGGCGAGCGAACTCAAAAGCCTGCTGGCCGAGCACCGCATCACCACCCGCCACGCCGTC
ACCGCCGTGCCCAATCAGGTGGCCGTGACCCGCAACATCATGGTGCCGCGCATGGACCGCAAGGACCTGCAAAGCGCCAT
TCGCTGGGAAGCCGAGCGCTACATCCCTTACCCCATCGACGAGGTCACGCTCGACTTCGACCTGCTCGACGACCCCGCCA
ACGTGCCCGAGGACGGGCAGATGGAAGTGGTCATCGCGGCGGCGCCCACCGAGGCCGTGCACCGTCAGATCGAGGTGCTG
CGCCTCGCGGGCCTCGAACCCACCGTGGTGGACCTCAAGAGCTTCGCGGCGCTGCGGGCGCTACGCGGCAACCTGCTCGG
CGAGCACCTCACCAAGAGCACCCTAACCGGCACCAACTACACCGAGGCCGGCGAGGTGGCGCTGGTGATGGAAATCGGCG
CGAGCAGCAGCGTCATCAATCTGGTGCGCGGCGACCGCATCCTGATGACCCGCAACATCAACGTGTCCGCCGACGATTTC
ACCACTGCGCTGCAAAAGGCCTTCGACCTCGACTTTGCCGCCGCCGAGGATGTCAAGCTCGGTTACGCCACCGCCACCAC
CCCCACCGAGGACGAGGAAGACCTGCTCAACTTCGACCTCAGCCGCGAGCAGTACAGCCCGGCGCGCGTGTTCGAAGTGG
TGCGCCCGGTGCTCGGCGACCTGATCACCGAAATCCGCCGCTCGCTGGAGTTCTACCGCGTGCAGAGCGGCGACGTGGTC
ATCGACCGGACCTTCCTCGCCGGGGGCGGCGCCAAGCTGCGCGGCCTGGCGGCGGCCATCGGGGACGCGCTGGGCTTCGG
GGTCGAAGTCGCGTCGCCCTGGCTGACGGTGCAGACCGACCAGGCGGGCGTGGACACCGGCTACCTCCAGACCAACGCCC
CCGAATTCACCGTGCCGCTGGGACTGGCGCTGCGGGGGGTGATGGGCCGTGGTTGA

Domains

Predicted by InterProScan.

• Type IV pilus assembly protein PilM; (PilM_2) (16-260)

• Type IV pilus assembly protein PilM; (PilM_2) (291-386)

3D structure

• AlphaFold DB: Q9RW99

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Thermus thermophilus HB27	46.512	98.977	0.46