Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   C2I17_RS20110 Genome accession   NZ_CP026040
Coordinates   4243090..4245453 (+) Length   787 a.a.
NCBI ID   WP_249878100.1    Uniprot ID   -
Organism   Niallia circulans strain PK3_15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4238090..4250453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I17_RS20095 (C2I17_19920) - 4239520..4239825 (+) 306 WP_249878098.1 post-transcriptional regulator -
  C2I17_RS20100 (C2I17_19925) secDF 4240182..4242434 (+) 2253 WP_249878099.1 protein translocase subunit SecDF -
  C2I17_RS20105 (C2I17_19930) - 4242571..4242870 (+) 300 WP_095331649.1 LapA family protein -
  C2I17_RS20110 (C2I17_19935) recJ 4243090..4245453 (+) 2364 WP_249878100.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  C2I17_RS20115 (C2I17_19940) - 4245444..4245956 (+) 513 WP_095331653.1 adenine phosphoribosyltransferase -
  C2I17_RS20120 (C2I17_19945) - 4246256..4248451 (+) 2196 WP_095331655.1 RelA/SpoT family protein -
  C2I17_RS20125 (C2I17_19950) dtd 4248464..4248904 (+) 441 WP_095331657.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 89327.18 Da        Isoelectric Point: 4.8399

>NTDB_id=265943 C2I17_RS20110 WP_249878100.1 4243090..4245453(+) (recJ) [Niallia circulans strain PK3_15]
MLRSKKRWIQEESSNQETISLLAEELKLAPIVASLLMKRGYHTSEEAKAFLFDDNNDFHDPFLLLGMDIAVDRIQKAITN
KELILIFGDYDADGVTSTTVMMKTLEGLGANVQFYIPNRFTEGYGPNERAFRYAKSIGVQLIITVDTGIAAVHEAEVAKE
LEIDLIITDHHEPGPILPEALAIIHPKIEGSEYPFRELAGVGVSFKLSHALYGKVPHHLLPFAAIGTIADLVSLTGENRL
LAKKGIRALQETDNIGLNALYRQMNIDKNTINEETIGFMLAPRINAIGRLGDADPAVDLLLTDDPEIAKELALEMEETNK
ERQAIVNQITVEAMEQVDELYPLNENRVLIVGKEGWNPGVVGIVASRLVEKYYRPTIVLSYDKETGIAKGSARSIEGFDL
YKNLSTCRDILPHFGGHPMAAGMSLKIKDVDVLRDSLNRLAFEQLTDENLIPLTKVDGSFSISDISIKSIEEMQMLAPFG
VDNPKPKLTFCDLEIDNMRKIGSNQNHLKIVLKDNEFELDGIGFGIGDLCDHISPSAKVSVLGELSINEWNNRKKPQIFI
QDMEVPHWQLFDYRSLRKVNQLYEVVPKNAQWIFFHQDSVPKDMDEQVSYQVIESIEQAAFLESMNNTMVLADYPPSLDM
LKTLLSNNAPERIYAVFYKQQSDFFSTMPTRDHFKWFYAFLAKQGNFHLQKFGGELARRKGWSKETVDFMSKVFFELNFV
TMKDGFISLNKNVPKRDLTESISFQQKQAQFELENELIYSSYEQLKNWFDLILKKSVNNEEEVKEWI

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=265943 C2I17_RS20110 WP_249878100.1 4243090..4245453(+) (recJ) [Niallia circulans strain PK3_15]
ATGTTACGTTCCAAAAAAAGATGGATACAAGAAGAATCTTCTAATCAAGAAACTATTTCACTATTAGCAGAAGAGCTAAA
ACTAGCACCAATTGTAGCCTCCCTTTTAATGAAAAGAGGTTATCATACATCAGAGGAAGCAAAAGCTTTTTTATTTGATG
ATAATAATGATTTTCATGATCCTTTCCTGCTTTTAGGAATGGATATAGCTGTAGATCGAATACAAAAGGCAATTACTAAC
AAAGAATTAATTCTTATTTTTGGAGATTATGATGCCGATGGAGTAACTAGCACGACCGTTATGATGAAAACGTTAGAGGG
TCTTGGAGCCAATGTGCAATTTTATATTCCAAACCGATTTACCGAAGGATATGGCCCTAATGAGAGGGCTTTTCGCTATG
CTAAAAGCATTGGTGTTCAATTGATTATTACAGTCGATACGGGTATTGCTGCTGTTCATGAAGCGGAAGTGGCAAAAGAA
TTGGAAATAGACTTAATCATTACCGATCACCATGAGCCAGGACCAATATTGCCAGAGGCACTTGCGATTATTCACCCCAA
GATAGAAGGTAGCGAGTATCCGTTCCGTGAGTTAGCAGGGGTAGGCGTTTCTTTCAAGTTATCTCACGCTCTTTATGGAA
AAGTTCCCCATCATTTATTGCCATTTGCGGCAATTGGAACAATCGCTGATCTTGTCTCCTTAACAGGAGAAAATCGCCTT
CTTGCGAAAAAAGGCATCAGGGCACTGCAAGAAACAGATAATATCGGTTTAAATGCATTATATCGTCAAATGAATATCGA
CAAAAATACGATTAATGAAGAAACAATCGGATTTATGCTTGCACCACGTATTAATGCTATTGGCAGATTAGGAGATGCGG
ATCCGGCTGTTGACTTATTATTAACAGATGATCCAGAGATTGCAAAAGAACTAGCATTAGAAATGGAAGAAACAAATAAA
GAAAGACAAGCGATTGTAAATCAGATAACAGTGGAAGCGATGGAACAAGTGGACGAGCTCTATCCATTAAATGAAAATCG
TGTTCTAATTGTAGGGAAAGAGGGCTGGAACCCTGGCGTTGTGGGGATCGTTGCTTCTCGATTGGTAGAAAAGTACTATC
GACCAACGATTGTATTAAGTTATGACAAGGAAACGGGAATAGCAAAAGGATCTGCTCGCAGTATTGAGGGATTTGATTTA
TATAAAAATTTATCGACGTGTAGAGATATTCTGCCTCATTTTGGTGGGCATCCAATGGCTGCAGGAATGTCTTTGAAAAT
AAAAGATGTAGATGTTCTTAGAGATAGTTTAAATAGATTAGCCTTTGAACAATTAACAGACGAAAATCTCATTCCATTAA
CAAAGGTGGATGGCAGCTTTTCAATAAGTGATATATCTATTAAATCAATAGAGGAAATGCAAATGCTCGCCCCATTTGGA
GTCGATAATCCCAAGCCTAAATTAACCTTCTGTGATCTAGAAATCGACAATATGCGGAAAATAGGTTCCAATCAAAACCA
TTTAAAGATTGTATTAAAAGATAATGAGTTTGAATTAGATGGAATAGGATTTGGAATTGGAGACTTATGTGATCATATCT
CTCCAAGTGCAAAAGTGTCTGTATTAGGGGAGCTTTCGATAAACGAATGGAATAATCGTAAAAAACCACAAATCTTTATT
CAAGATATGGAGGTTCCTCATTGGCAGCTGTTTGACTATCGAAGTTTAAGAAAAGTGAATCAATTATACGAAGTAGTGCC
TAAAAATGCGCAGTGGATTTTTTTTCATCAAGATTCTGTTCCTAAGGATATGGATGAACAAGTCTCTTATCAGGTGATTG
AATCAATAGAGCAAGCAGCATTCCTAGAATCGATGAATAATACTATGGTACTGGCAGATTATCCCCCTAGTTTGGATATG
CTAAAAACATTGTTATCTAACAATGCTCCTGAAAGAATCTATGCTGTTTTTTATAAACAACAAAGTGACTTTTTTAGTAC
CATGCCAACTCGTGATCATTTTAAATGGTTCTATGCTTTTTTAGCAAAACAGGGAAATTTTCACCTGCAAAAATTCGGCG
GAGAGCTCGCTAGAAGAAAAGGTTGGAGTAAAGAAACGGTAGATTTTATGTCAAAGGTGTTTTTTGAATTAAATTTTGTT
ACAATGAAGGATGGATTTATTTCACTGAATAAGAATGTTCCAAAAAGAGATTTAACAGAATCTATCTCTTTTCAACAAAA
ACAAGCGCAATTTGAGCTGGAAAATGAATTAATTTATTCATCTTATGAACAACTTAAAAATTGGTTTGATCTTATTCTAA
AGAAATCCGTCAATAATGAGGAGGAAGTAAAAGAATGGATTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-769)

RecJ OB domain (RecJ_OB)

(456-562)

DHHA1 domain (DHHA1)

(316-439)

DHH family (DHH)

(84-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.605

100

0.526

Multiple sequence alignment