Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   C2H97_RS17825 Genome accession   NZ_CP026038
Coordinates   3398919..3399698 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis PY79 strain PK1_3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3393919..3404698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H97_RS17805 (C2H97_17820) trmFO 3394612..3395919 (+) 1308 WP_015715883.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  C2H97_RS17810 (C2H97_17825) xerC 3395987..3396901 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  C2H97_RS17815 (C2H97_17830) clpQ 3396914..3397459 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  C2H97_RS17820 (C2H97_17835) hslU 3397476..3398879 (+) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  C2H97_RS17825 (C2H97_17840) codY 3398919..3399698 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  C2H97_RS17830 (C2H97_17845) flgB 3400078..3400467 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  C2H97_RS17835 (C2H97_17850) flgC 3400467..3400919 (+) 453 WP_077670728.1 flagellar basal body rod protein FlgC -
  C2H97_RS17840 (C2H97_17855) fliE 3400930..3401250 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  C2H97_RS17845 (C2H97_17860) fliF 3401296..3402906 (+) 1611 WP_120028090.1 flagellar basal-body MS-ring/collar protein FliF -
  C2H97_RS17850 (C2H97_17865) fliG 3402919..3403935 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  C2H97_RS17855 (C2H97_17870) fliH 3403928..3404680 (+) 753 WP_249848240.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=265811 C2H97_RS17825 WP_003220850.1 3398919..3399698(+) (codY) [Bacillus subtilis PY79 strain PK1_3]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=265811 C2H97_RS17825 WP_003220850.1 3398919..3399698(+) (codY) [Bacillus subtilis PY79 strain PK1_3]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTGCTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment