Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   C2H97_RS07040 Genome accession   NZ_CP026038
Coordinates   1343276..1343395 (+) Length   39 a.a.
NCBI ID   WP_085185514.1    Uniprot ID   -
Organism   Bacillus subtilis PY79 strain PK1_3     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 1338276..1348395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H97_RS07020 (C2H97_07035) albG 1338440..1339141 (+) 702 WP_120027590.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  C2H97_RS07025 (C2H97_07040) ywhL 1339147..1340523 (-) 1377 WP_120027591.1 YncE family protein -
  C2H97_RS07030 (C2H97_07045) ywhK 1340562..1341917 (-) 1356 WP_038829813.1 YncE family protein -
  C2H97_RS07035 (C2H97_07055) rapF 1342147..1343292 (+) 1146 WP_021480843.1 response regulator aspartate phosphatase RapF Regulator
  C2H97_RS07040 (C2H97_07060) phrF 1343276..1343395 (+) 120 WP_085185514.1 phosphatase RapF inhibitor PhrF Regulator
  C2H97_RS07045 (C2H97_07065) - 1343642..1344121 (+) 480 WP_015714892.1 hypothetical protein -
  C2H97_RS07050 (C2H97_07070) - 1344270..1345058 (+) 789 WP_015714893.1 membrane protein -
  C2H97_RS07055 (C2H97_07075) - 1345045..1345719 (+) 675 WP_015714894.1 hypothetical protein -
  C2H97_RS07060 (C2H97_07080) - 1345729..1346526 (+) 798 WP_231573542.1 hypothetical protein -
  C2H97_RS07065 (C2H97_07085) - 1346529..1347176 (+) 648 WP_015714896.1 ABC transporter ATP-binding protein -
  C2H97_RS07070 (C2H97_07090) - 1347169..1347729 (+) 561 WP_015714897.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4259.20 Da        Isoelectric Point: 10.4997

>NTDB_id=265773 C2H97_RS07040 WP_085185514.1 1343276..1343395(+) (phrF) [Bacillus subtilis PY79 strain PK1_3]
MKLKSKLLLFCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=265773 C2H97_RS07040 WP_085185514.1 1343276..1343395(+) (phrF) [Bacillus subtilis PY79 strain PK1_3]
ATGAAATTGAAGTCTAAACTATTACTCTTTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

97.436

100

0.974
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment