Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   LACR_RS11100 Genome accession   NC_008527
Coordinates   2145175..2146113 (-) Length   312 a.a.
NCBI ID   WP_011677085.1    Uniprot ID   -
Organism   Lactococcus cremoris subsp. cremoris SK11     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2140175..2151113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LACR_RS11075 (LACR_2291) frr 2140354..2140911 (-) 558 WP_011677081.1 ribosome recycling factor -
  LACR_RS11080 (LACR_2292) pyrH 2141067..2141783 (-) 717 WP_004254608.1 UMP kinase -
  LACR_RS11085 (LACR_2293) - 2141868..2142320 (-) 453 WP_011677082.1 hypothetical protein -
  LACR_RS11090 (LACR_2294) - 2142450..2143637 (-) 1188 WP_011677083.1 acetate kinase -
  LACR_RS11095 (LACR_2295) - 2143796..2144983 (-) 1188 WP_011677084.1 acetate kinase -
  LACR_RS11100 (LACR_2296) comYH 2145175..2146113 (-) 939 WP_011677085.1 class I SAM-dependent methyltransferase Machinery gene
  LACR_RS11105 (LACR_2297) - 2146201..2146452 (-) 252 WP_011677086.1 DUF3165 family protein -
  LACR_RS11110 (LACR_2298) typA 2146553..2148385 (-) 1833 WP_031286284.1 translational GTPase TypA -
  LACR_RS14775 (LACR_2301) - 2149738..2150162 (-) 425 Protein_2166 hypothetical protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34694.69 Da        Isoelectric Point: 4.3603

>NTDB_id=26575 LACR_RS11100 WP_011677085.1 2145175..2146113(-) (comYH) [Lactococcus cremoris subsp. cremoris SK11]
MNMEKVAQGFELVVENITKLSEKLDTDFYDAFVEQNAAFLDGTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQANHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
YAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVAATDGHTFAHHLLIEQSFNYLKDGAFAVFLAPEDLLTSV
QGPLLKEWISQHGSIMAVITLPSSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEIFMEEFTKTVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=26575 LACR_RS11100 WP_011677085.1 2145175..2146113(-) (comYH) [Lactococcus cremoris subsp. cremoris SK11]
ATGAACATGGAAAAAGTGGCTCAAGGTTTTGAGCTGGTAGTTGAAAATATTACAAAATTATCTGAGAAATTAGATACAGA
TTTTTATGATGCTTTTGTGGAACAAAATGCTGCTTTTTTAGATGGTACTGACCAAGGAATTGTTGAGCTGTCAGTAAATA
ATGACAAACTCCGTCAGTTAAATTTATCAAATAAAGAATGGCAAAAACTTTTTCAATTTGTTTTATTAAAAGGTTCGCAA
GTTGCGCCTCTTCAGGCAAATCATGCCATGACTCCTGATGCAATTGGTCTAATTTTCAACTTTATCATTGAACATCTCAA
TAAAAATTCTGAACTTCGATTAATTGAGTTTGGTTCTGGTATGGGTAATCTTGCGGAAACATTGCTTGTTAATCTTAATA
AAAAAGTAGATTATGTTGGTTTTGAAGTCGATGATTTACTTTTAGATTTGTCAGCTTCAATGGCTGAAATCATGGGAAGC
TATGCCGAATTTATGCAAATTGATGCGGTTCAAAAACGGTTGATGGAGCCAGCTGATGTTGTTGTTAGTGATTTGCCAAT
CGGTTTTTATCCAGATGATGAAGTTGCGAAAAATTTTGAAGTCGCTGCTACTGATGGACACACCTTTGCACATCATTTGT
TGATTGAACAATCATTTAATTACTTGAAAGATGGTGCTTTTGCAGTTTTCTTAGCACCGGAGGATTTACTGACAAGTGTA
CAAGGCCCACTTTTAAAAGAATGGATTAGTCAGCATGGAAGTATTATGGCGGTAATTACTTTACCAAGCTCACTTTTTAA
TGCTGATGCTAAAGCAATTTATGTCTTGAAAAAAGGGCCTGCTGCTCATGCGACCTTTGCTCATCCTTTGTCATCATTGA
CAGACAGAGAAAGTTTAGAAATCTTTATGGAAGAATTTACAAAAACTGTAAAGTTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

49.201

100

0.494
  comYH Streptococcus mutans UA159

48.882

100

0.49

Multiple sequence alignment