Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   C2H95_RS19160 Genome accession   NZ_CP026037
Coordinates   3703538..3704182 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_17     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3698538..3709182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H95_RS19125 (C2H95_19045) mrpB 3699730..3700161 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  C2H95_RS19130 (C2H95_19050) mrpC 3700161..3700502 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  C2H95_RS19135 (C2H95_19055) mrpD 3700495..3701976 (+) 1482 WP_103804331.1 Na+/H+ antiporter subunit D -
  C2H95_RS19140 (C2H95_19060) mrpE 3701982..3702458 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  C2H95_RS19145 (C2H95_19065) mrpF 3702458..3702742 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  C2H95_RS19150 (C2H95_19070) mnhG 3702726..3703100 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  C2H95_RS19155 (C2H95_19075) yuxO 3703139..3703519 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  C2H95_RS19160 (C2H95_19080) comA 3703538..3704182 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  C2H95_RS19165 (C2H95_19085) - 3704263..3705732 (-) 1470 Protein_3714 sensor histidine kinase -
  C2H95_RS19170 degQ 3705741..3705812 (-) 72 Protein_3715 degradation enzyme regulation protein DegQ -
  C2H95_RS19175 - 3706034..3706096 (+) 63 Protein_3716 hypothetical protein -
  C2H95_RS19180 (C2H95_19090) - 3706275..3706643 (+) 369 WP_017695529.1 hypothetical protein -
  C2H95_RS19185 (C2H95_19095) pdeH 3706619..3707848 (-) 1230 WP_003243525.1 cyclic di-GMP phosphodiesterase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=265735 C2H95_RS19160 WP_003220716.1 3703538..3704182(-) (comA) [Bacillus subtilis strain PK5_17]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=265735 C2H95_RS19160 WP_003220716.1 3703538..3704182(-) (comA) [Bacillus subtilis strain PK5_17]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment