Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   C2H95_RS11770 Genome accession   NZ_CP026037
Coordinates   2269860..2270639 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain PK5_17     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2264860..2275639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H95_RS11750 (C2H95_11715) trmFO 2265553..2266860 (+) 1308 WP_015715883.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  C2H95_RS11755 (C2H95_11720) xerC 2266928..2267842 (+) 915 WP_064671379.1 tyrosine recombinase XerC -
  C2H95_RS11760 (C2H95_11725) clpQ 2267855..2268400 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  C2H95_RS11765 (C2H95_11730) hslU 2268417..2269820 (+) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  C2H95_RS11770 (C2H95_11735) codY 2269860..2270639 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  C2H95_RS11775 (C2H95_11740) flgB 2271019..2271408 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  C2H95_RS11780 (C2H95_11745) flgC 2271408..2271860 (+) 453 WP_021479294.1 flagellar basal body rod protein FlgC -
  C2H95_RS11785 (C2H95_11750) fliE 2271871..2272191 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  C2H95_RS11790 (C2H95_11755) fliF 2272237..2273847 (+) 1611 WP_249849426.1 flagellar basal-body MS-ring/collar protein FliF -
  C2H95_RS11795 (C2H95_11760) fliG 2273860..2274876 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  C2H95_RS11800 (C2H95_11765) fliH 2274869..2275621 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=265706 C2H95_RS11770 WP_003220850.1 2269860..2270639(+) (codY) [Bacillus subtilis strain PK5_17]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=265706 C2H95_RS11770 WP_003220850.1 2269860..2270639(+) (codY) [Bacillus subtilis strain PK5_17]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCAGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment