Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DK878_RS01805 Genome accession   NZ_CP031379
Coordinates   345881..346669 (+) Length   262 a.a.
NCBI ID   WP_013730143.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2660     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 340881..351669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK878_RS01780 (DK878_01845) - 341179..342138 (-) 960 WP_014636805.1 asparaginase -
  DK878_RS10820 - 342208..343573 (+) 1366 Protein_316 Cof-type HAD-IIB family hydrolase -
  DK878_RS01795 (DK878_01860) - 343589..344041 (-) 453 WP_004194294.1 universal stress protein -
  DK878_RS01800 (DK878_01865) - 344196..345410 (+) 1215 WP_002937606.1 pyridoxal phosphate-dependent aminotransferase -
  DK878_RS01805 (DK878_01870) codY 345881..346669 (+) 789 WP_013730143.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DK878_RS01810 (DK878_01875) - 346671..347222 (+) 552 WP_024376330.1 cysteine hydrolase family protein -
  DK878_RS01815 (DK878_01880) - 347505..348693 (+) 1189 Protein_321 IS110 family transposase -
  DK878_RS01820 (DK878_01885) rplS 349251..349598 (+) 348 WP_011921928.1 50S ribosomal protein L19 -
  DK878_RS01825 (DK878_01890) - 349780..350454 (+) 675 WP_013730145.1 hydrolase -
  DK878_RS01830 (DK878_01895) gatC 350672..350974 (+) 303 WP_002939046.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29263.33 Da        Isoelectric Point: 4.6797

>NTDB_id=265523 DK878_RS01805 WP_013730143.1 345881..346669(+) (codY) [Streptococcus suis strain ISU2660]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMSYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELAGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=265523 DK878_RS01805 WP_013730143.1 345881..346669(+) (codY) [Streptococcus suis strain ISU2660]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCTATTGCTGAACATCTATCAGCTATTATTGATTGCAATTCTTGTATTATTAATAGCGAAGGTGAAGTTTTGG
GATACCACATGAGTTATGAGACAAACAATGATCGTGTGGAAGAATTTTTCCAAAACAAACAATTCCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTCGAATCACG
CTCGACTTATCCAAACGGGCTGACAACGATAGCGCCTATCCACGTAACGGGGATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACACTATCTTACTCAGA
AATGAAAGCAGTTGCAGCTATTTTGGGTGAATTGGCTGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

58.779

100

0.588
  codY Bacillus subtilis subsp. subtilis str. 168

52.033

93.893

0.489