Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   C2H96_RS02490 Genome accession   NZ_CP026035
Coordinates   543022..543801 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain PK5_68     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 538022..548801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H96_RS02460 (C2H96_02395) fliH 538040..538792 (-) 753 WP_249848240.1 flagellar assembly protein FliH -
  C2H96_RS02465 (C2H96_02400) fliG 538785..539801 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  C2H96_RS02470 (C2H96_02405) fliF 539814..541424 (-) 1611 WP_120028090.1 flagellar basal-body MS-ring/collar protein FliF -
  C2H96_RS02475 (C2H96_02410) fliE 541470..541790 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  C2H96_RS02480 (C2H96_02415) flgC 541801..542253 (-) 453 WP_077670728.1 flagellar basal body rod protein FlgC -
  C2H96_RS02485 (C2H96_02420) flgB 542253..542642 (-) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  C2H96_RS02490 (C2H96_02425) codY 543022..543801 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  C2H96_RS02495 (C2H96_02430) hslU 543841..545244 (-) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  C2H96_RS02500 (C2H96_02435) clpQ 545261..545806 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  C2H96_RS02505 (C2H96_02440) xerC 545819..546733 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  C2H96_RS02510 (C2H96_02445) trmFO 546801..548108 (-) 1308 WP_015715883.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=265506 C2H96_RS02490 WP_003220850.1 543022..543801(-) (codY) [Bacillus subtilis strain PK5_68]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=265506 C2H96_RS02490 WP_003220850.1 543022..543801(-) (codY) [Bacillus subtilis strain PK5_68]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTGCTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment