Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   C2H94_RS18990 Genome accession   NZ_CP026034
Coordinates   3611926..3612705 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain PK5_52     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3606926..3617705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H94_RS18970 (C2H94_18900) trmFO 3607619..3608926 (+) 1308 WP_015715883.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  C2H94_RS18975 (C2H94_18905) xerC 3608994..3609908 (+) 915 WP_064671379.1 tyrosine recombinase XerC -
  C2H94_RS18980 (C2H94_18910) clpQ 3609921..3610466 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  C2H94_RS18985 (C2H94_18915) hslU 3610483..3611886 (+) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  C2H94_RS18990 (C2H94_18920) codY 3611926..3612705 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  C2H94_RS18995 (C2H94_18925) flgB 3613085..3613474 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  C2H94_RS19000 (C2H94_18930) flgC 3613474..3613926 (+) 453 WP_021479294.1 flagellar basal body rod protein FlgC -
  C2H94_RS19005 (C2H94_18935) fliE 3613937..3614257 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  C2H94_RS19010 (C2H94_18940) fliF 3614303..3615913 (+) 1611 WP_249849426.1 flagellar basal-body MS-ring/collar protein FliF -
  C2H94_RS19015 (C2H94_18945) fliG 3615926..3616942 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  C2H94_RS19020 (C2H94_18950) fliH 3616935..3617687 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=265500 C2H94_RS18990 WP_003220850.1 3611926..3612705(+) (codY) [Bacillus subtilis strain PK5_52]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=265500 C2H94_RS18990 WP_003220850.1 3611926..3612705(+) (codY) [Bacillus subtilis strain PK5_52]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCAGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment