Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   C2H98_RS24270 Genome accession   NZ_CP026033
Coordinates   5058372..5060735 (+) Length   787 a.a.
NCBI ID   WP_123258039.1    Uniprot ID   -
Organism   Niallia circulans strain PK3_138     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5053372..5065735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H98_RS24255 (C2H98_24215) - 5054801..5055106 (+) 306 WP_095331645.1 post-transcriptional regulator -
  C2H98_RS24260 (C2H98_24220) secDF 5055463..5057715 (+) 2253 WP_095331647.1 protein translocase subunit SecDF -
  C2H98_RS24265 (C2H98_24225) - 5057853..5058152 (+) 300 WP_095331649.1 LapA family protein -
  C2H98_RS24270 (C2H98_24230) recJ 5058372..5060735 (+) 2364 WP_123258039.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  C2H98_RS24275 (C2H98_24235) - 5060726..5061238 (+) 513 WP_095331653.1 adenine phosphoribosyltransferase -
  C2H98_RS24280 (C2H98_24240) - 5061539..5063734 (+) 2196 WP_095331655.1 RelA/SpoT family protein -
  C2H98_RS24285 (C2H98_24245) dtd 5063747..5064187 (+) 441 WP_095331657.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 89356.17 Da        Isoelectric Point: 4.7857

>NTDB_id=265420 C2H98_RS24270 WP_123258039.1 5058372..5060735(+) (recJ) [Niallia circulans strain PK3_138]
MLRSKKRWIQEETSNQETISLLAEELKLAPIVASLLMKRGYHTSEEAKAFLFDDNNDFHDPFLLLGMDIAVDRIQKAITN
KELILIFGDYDADGVTSTTVMMKTLEGLGANVQFYIPNRFTEGYGPNERAFRYAKSIGVQLIITVDTGIAAVHEAEVAKE
LEIDLIITDHHEPGPILPEALAIIHPKIEGSEYPFRELAGVGVSFKLSHALYGKVPHHLLPFAAIGTIADLVSLTGENRL
LAKKGIRALQETDNIGLNALYRQMNIDKNTINEETIGFMLAPRINAIGRLGDADPAVDLLLTDDPEIAKELALEMEETNK
ERQAIVNQITVEAMEQVDELYPLNENRVLIVGKEGWNPGVVGIVASRLVEKYYRPTIVLSYDKETGIAKGSARSIEGFDL
YKNLSTCRDILPHFGGHPMAAGMSLKIEDVDVLRDSLNRLAFEQLTEENLIPLTKVDGSFSISDISIKSIEEMQMLAPFG
VDNPKPKLTFCDLEIDNMRKIGSNQNHLKIVLKDNEFELDGIGFGIGDLCDHISPSAKVSVLGELSINEWNNRKKPQIFI
QDMEVPHWQLFDYRSLRKVNQLYEVVPKNAQWIFFHQDSVPKDMDEQVSYQVIESIEQAAFLESMNNTMVLADYPPSLDM
LKTLLSNNAPERIYAVFYKQQSDFFSTMPTRDHFKWFYAFLAKQGNFHLQKFGGELARRKGWSKETVDFMSKVFFELNFV
TMKDGFISLNKNVPKRDLTESISFQQKQAQFELENELIYSSYEQLKNWFDLILKKSVNNEEEVKEWI

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=265420 C2H98_RS24270 WP_123258039.1 5058372..5060735(+) (recJ) [Niallia circulans strain PK3_138]
ATGTTACGTTCCAAAAAAAGATGGATACAAGAAGAAACTTCTAATCAAGAAACTATTTCACTATTAGCAGAAGAGCTAAA
ACTAGCACCAATTGTAGCCTCTCTTTTAATGAAAAGAGGTTATCATACATCAGAGGAAGCAAAAGCTTTTTTATTTGATG
ATAATAATGATTTTCATGATCCTTTCCTGCTTTTAGGAATGGATATAGCTGTAGATCGAATACAAAAGGCAATTACTAAC
AAAGAATTAATTCTTATTTTTGGAGATTATGATGCCGATGGAGTAACTAGCACGACCGTTATGATGAAAACGTTAGAGGG
TCTTGGAGCCAATGTGCAATTTTATATTCCAAACCGATTTACCGAAGGATATGGCCCTAATGAGAGGGCTTTTCGCTATG
CTAAAAGCATTGGTGTTCAATTGATTATTACAGTCGATACGGGTATTGCTGCTGTTCATGAAGCGGAAGTGGCAAAAGAA
TTGGAAATAGACTTAATCATTACCGATCACCATGAGCCAGGACCAATATTGCCAGAGGCACTTGCGATCATTCACCCCAA
GATAGAAGGTAGCGAGTATCCGTTCCGTGAGTTAGCAGGGGTAGGCGTTTCTTTCAAGCTATCTCACGCTCTTTATGGAA
AAGTTCCCCATCATTTATTGCCATTTGCGGCAATTGGAACAATCGCTGATCTTGTCTCCTTAACAGGAGAAAATCGCCTT
CTTGCGAAAAAAGGCATCAGGGCACTGCAAGAAACAGATAATATCGGTTTAAATGCATTATATCGTCAAATGAATATCGA
CAAAAATACGATTAATGAAGAAACAATCGGATTTATGCTTGCACCACGTATTAATGCTATTGGCAGATTAGGAGATGCGG
ATCCGGCTGTTGACTTATTATTAACAGATGATCCAGAGATTGCAAAAGAACTAGCATTAGAAATGGAAGAAACAAATAAA
GAAAGACAAGCGATTGTAAATCAGATAACAGTGGAAGCGATGGAACAAGTGGACGAGCTCTATCCATTAAATGAAAATCG
TGTTCTAATTGTAGGGAAAGAGGGCTGGAACCCTGGCGTTGTGGGGATCGTTGCTTCTCGATTGGTAGAAAAGTACTATC
GACCAACGATTGTATTAAGTTATGACAAGGAAACGGGAATAGCAAAAGGATCTGCTCGCAGTATTGAGGGATTTGATTTA
TATAAAAATTTATCGACGTGTAGAGATATTCTGCCTCATTTTGGTGGGCATCCAATGGCTGCAGGAATGTCTTTGAAAAT
AGAAGATGTAGATGTTCTTAGAGATAGTTTAAATAGATTAGCCTTTGAACAATTAACAGAAGAAAATCTCATTCCATTAA
CAAAGGTGGATGGCAGCTTTTCAATAAGTGATATATCTATTAAATCAATAGAGGAAATGCAAATGCTCGCCCCATTTGGA
GTCGATAATCCCAAGCCTAAATTAACCTTCTGTGATCTAGAAATCGACAATATGCGGAAAATAGGTTCCAATCAAAACCA
TTTAAAGATTGTATTAAAAGATAATGAGTTTGAATTAGATGGAATAGGATTTGGAATTGGTGACTTATGTGATCATATCT
CTCCAAGTGCAAAAGTGTCTGTATTAGGGGAGCTTTCGATAAACGAATGGAATAATCGTAAAAAACCACAAATCTTTATT
CAAGATATGGAGGTTCCTCATTGGCAGCTGTTTGACTATCGAAGTTTAAGAAAAGTGAATCAATTATACGAAGTAGTGCC
TAAAAATGCACAGTGGATTTTTTTTCATCAAGATTCTGTTCCTAAGGATATGGATGAACAAGTCTCTTATCAGGTGATTG
AATCAATAGAGCAAGCAGCATTCCTAGAATCGATGAATAATACTATGGTACTGGCAGATTATCCCCCTAGTTTGGATATG
CTAAAAACATTGTTATCTAACAATGCTCCTGAAAGAATCTATGCTGTTTTTTATAAACAACAAAGTGACTTTTTTAGTAC
CATGCCAACTCGTGATCATTTTAAATGGTTCTATGCTTTTTTAGCAAAACAGGGGAATTTTCACCTGCAAAAATTCGGCG
GAGAGCTCGCTAGAAGAAAAGGTTGGAGTAAAGAAACGGTAGATTTTATGTCAAAGGTGTTTTTTGAATTAAATTTTGTT
ACAATGAAGGATGGATTTATTTCACTGAATAAGAATGTTCCAAAAAGAGATTTAACAGAATCTATCTCTTTTCAACAAAA
ACAAGCGCAATTTGAGCTGGAAAATGAATTAATTTATTCATCTTATGAACAACTTAAAAATTGGTTTGATCTTATTCTAA
AGAAATCCGTCAATAATGAGGAGGAAGTAAAAGAATGGATTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-769)

DHHA1 domain (DHHA1)

(316-439)

RecJ OB domain (RecJ_OB)

(456-562)

DHH family (DHH)

(84-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.859

100

0.529

Multiple sequence alignment