Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   C2H91_RS01515 Genome accession   NZ_CP026030
Coordinates   374383..375162 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain PK3_9     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 369383..380162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H91_RS01485 (C2H91_01475) fliH 369401..370153 (-) 753 WP_032725764.1 flagellar assembly protein FliH -
  C2H91_RS01490 (C2H91_01480) fliG 370146..371162 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  C2H91_RS01495 (C2H91_01485) fliF 371175..372785 (-) 1611 WP_043940114.1 flagellar basal-body MS-ring/collar protein FliF -
  C2H91_RS01500 (C2H91_01490) fliE 372831..373151 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  C2H91_RS01505 (C2H91_01495) flgC 373162..373614 (-) 453 WP_021479294.1 flagellar basal body rod protein FlgC -
  C2H91_RS01510 (C2H91_01500) flgB 373614..374003 (-) 390 WP_249851046.1 flagellar basal body rod protein FlgB -
  C2H91_RS01515 (C2H91_01505) codY 374383..375162 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  C2H91_RS01520 (C2H91_01510) hslU 375202..376605 (-) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  C2H91_RS01525 (C2H91_01515) clpQ 376622..377167 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  C2H91_RS01530 (C2H91_01520) xerC 377180..378094 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  C2H91_RS01535 (C2H91_01525) trmFO 378162..379469 (-) 1308 WP_249851047.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=265239 C2H91_RS01515 WP_003220850.1 374383..375162(-) (codY) [Bacillus subtilis strain PK3_9]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=265239 C2H91_RS01515 WP_003220850.1 374383..375162(-) (codY) [Bacillus subtilis strain PK3_9]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGAGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCAGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment