Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DV160_RS08325 Genome accession   NZ_CP031336
Coordinates   1368004..1368621 (-) Length   205 a.a.
NCBI ID   WP_002217147.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M21717     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1363004..1373621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV160_RS08305 recD 1363687..1365432 (-) 1746 WP_002220971.1 exodeoxyribonuclease V subunit alpha Machinery gene
  DV160_RS08310 lolD 1365500..1366195 (-) 696 WP_002220970.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  DV160_RS08315 - 1366188..1367435 (-) 1248 WP_002220969.1 lipoprotein-releasing ABC transporter permease subunit -
  DV160_RS08320 - 1367640..1367918 (+) 279 WP_002220967.1 hypothetical protein -
  DV160_RS08325 recR 1368004..1368621 (-) 618 WP_002217147.1 recombination mediator RecR Machinery gene
  DV160_RS08330 - 1368688..1370226 (-) 1539 WP_002220964.1 SurA N-terminal domain-containing protein -
  DV160_RS08335 - 1370281..1370655 (-) 375 WP_002220962.1 arsenate reductase -
  DV160_RS08340 - 1370805..1372433 (+) 1629 WP_115425116.1 ABC-F family ATPase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22358.74 Da        Isoelectric Point: 6.2234

>NTDB_id=264831 DV160_RS08325 WP_002217147.1 1368004..1368621(-) (recR) [Neisseria meningitidis strain M21717]
MSHKKQDAFQGLIDALKVLPNVGPKSAQRIAYHLLQHKRKEAEKLVDALQTALKQVYHCAMCNTFCEGGLCDICADETRD
GRRLMVVHMPADVSNMEAANCHDGLYFVLMGQINTALGMDVSAIALDRLAQRLGGGEVEEIIIATAFTAEGNATAYVLSE
FFKNLPYKVSRLSQGIPLGGELEYVDAGTLAQAVYERRLIKEGGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=264831 DV160_RS08325 WP_002217147.1 1368004..1368621(-) (recR) [Neisseria meningitidis strain M21717]
ATGAGCCACAAAAAACAAGATGCCTTCCAAGGATTGATCGACGCGCTGAAGGTTTTACCCAACGTCGGGCCGAAATCGGC
ACAGCGGATAGCGTATCATTTGCTCCAACACAAGCGCAAAGAGGCTGAAAAACTGGTGGATGCCTTGCAGACGGCATTGA
AGCAGGTTTACCATTGCGCGATGTGCAACACGTTTTGCGAAGGCGGATTGTGCGATATTTGTGCCGATGAAACACGCGAC
GGGCGGCGGCTGATGGTGGTGCATATGCCTGCCGACGTGTCGAATATGGAAGCGGCAAACTGCCACGACGGGCTGTATTT
CGTCCTGATGGGGCAAATCAATACGGCATTGGGAATGGACGTATCCGCCATCGCATTGGACAGGCTGGCGCAACGGCTGG
GCGGCGGGGAAGTCGAAGAAATCATTATTGCAACCGCTTTTACCGCAGAAGGCAATGCGACGGCGTATGTCCTGTCCGAG
TTTTTTAAAAACCTGCCTTACAAAGTCAGCAGGCTGTCGCAGGGCATTCCCTTGGGCGGCGAATTGGAATATGTCGATGC
GGGAACGCTGGCGCAGGCGGTGTACGAACGCCGCCTGATTAAAGAAGGCGGGGCATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.688

97.073

0.366