Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DV166_RS11310 Genome accession   NZ_CP031334
Coordinates   1891750..1892367 (-) Length   205 a.a.
NCBI ID   WP_025455632.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22293     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1886750..1897367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV166_RS11290 recD 1887413..1889209 (-) 1797 WP_115437141.1 exodeoxyribonuclease V subunit alpha Machinery gene
  DV166_RS11295 lolD 1889277..1889972 (-) 696 WP_115437142.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  DV166_RS11300 - 1889965..1891212 (-) 1248 WP_002220969.1 lipoprotein-releasing ABC transporter permease subunit -
  DV166_RS11305 - 1891416..1891694 (+) 279 WP_002213502.1 hypothetical protein -
  DV166_RS11310 recR 1891750..1892367 (-) 618 WP_025455632.1 recombination mediator RecR Machinery gene
  DV166_RS11315 - 1892434..1893972 (-) 1539 WP_002237006.1 SurA N-terminal domain-containing protein -
  DV166_RS11320 - 1894058..1894411 (-) 354 WP_002239718.1 arsenate reductase -
  DV166_RS11325 - 1894561..1896189 (+) 1629 WP_002239768.1 ABC-F family ATPase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22384.82 Da        Isoelectric Point: 6.2234

>NTDB_id=264705 DV166_RS11310 WP_025455632.1 1891750..1892367(-) (recR) [Neisseria meningitidis strain M22293]
MSHKKQDAFQGLIDALKVLPNVGPKLAQRIAYHLLQHKRKEAEKLVDALQTALKQVYHCAMCNTFCEGGLCDICADETRD
GRRLMVVHMPADVSNMEAANCHDGLYFVLMGQINTALGMDVSAIALDRLAQRLGGGEVEEIIIATAFTAEGNATAYVLSE
FFKNLPYKVSRLSQGIPLGGELEYVDAGTLAQAVYERRLIKEGGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=264705 DV166_RS11310 WP_025455632.1 1891750..1892367(-) (recR) [Neisseria meningitidis strain M22293]
ATGAGCCACAAAAAACAAGATGCCTTCCAAGGATTGATCGACGCGCTGAAGGTTTTACCCAACGTCGGGCCGAAATTGGC
ACAGCGGATAGCGTATCATTTGCTCCAACACAAGCGCAAAGAGGCTGAAAAACTGGTGGATGCCTTGCAGACGGCATTGA
AGCAGGTTTACCATTGCGCGATGTGCAACACGTTTTGCGAAGGCGGATTGTGCGATATTTGTGCCGATGAAACACGCGAC
GGGCGGCGGCTGATGGTGGTGCATATGCCTGCCGACGTGTCGAATATGGAAGCGGCAAACTGCCACGACGGGCTGTATTT
CGTCCTGATGGGGCAAATCAATACGGCACTGGGAATGGACGTATCCGCCATCGCATTGGACAGGCTGGCGCAACGGCTGG
GCGGCGGGGAAGTCGAAGAAATCATTATTGCAACCGCTTTTACCGCAGAAGGCAATGCGACGGCGTATGTCCTGTCCGAG
TTTTTTAAAAACCTGCCTTACAAAGTCAGCAGGCTGTCGCAGGGCATCCCCTTGGGCGGCGAATTGGAATATGTCGATGC
GGGAACGCTGGCGCAGGCGGTGTACGAACGCCGCCTGATTAAAGAAGGCGGGGCATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.186

97.073

0.361