Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LVIS_RS17560 Genome accession   NC_008497
Coordinates   1210628..1211761 (-) Length   377 a.a.
NCBI ID   WP_011667973.1    Uniprot ID   J7LIP1
Organism   Levilactobacillus brevis ATCC 367     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1205628..1216761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVIS_RS17550 (LVIS_1234) - 1207580..1208374 (-) 795 WP_011667970.1 TIGR00282 family metallophosphoesterase -
  LVIS_RS17555 (LVIS_1235) rny 1208506..1210065 (-) 1560 WP_011667971.1 ribonuclease Y -
  LVIS_RS23525 (LVIS_1236) - 1210393..1210545 (+) 153 WP_011667972.1 hypothetical protein -
  LVIS_RS17560 (LVIS_1237) recA 1210628..1211761 (-) 1134 WP_011667973.1 recombinase RecA Machinery gene
  LVIS_RS17565 (LVIS_1238) cinA 1211855..1213105 (-) 1251 WP_011667974.1 competence/damage-inducible protein A Machinery gene
  LVIS_RS17570 (LVIS_1239) pgsA 1213161..1213748 (-) 588 WP_011668109.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LVIS_RS17575 (LVIS_1240) - 1213810..1214715 (-) 906 WP_011668110.1 helix-turn-helix domain-containing protein -
  LVIS_RS17580 (LVIS_1241) yfmH 1214829..1216118 (-) 1290 WP_011668111.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 40320.72 Da        Isoelectric Point: 5.3901

>NTDB_id=26461 LVIS_RS17560 WP_011667973.1 1210628..1211761(-) (recA) [Levilactobacillus brevis ATCC 367]
MADERQAALDKALKKIEKDFGKGSIMRLGDNSNLEVETVPSGSLALDVALGVGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQKRGGTAAYIDAENALDPAYATALGVNIDDLLLSQPDTGEQGLQIADALISSGAIDIVVVDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQIKDGTDVIGNR
TRIKVVKNKVAPPFKRAEVDIMYGQGISQTGELLDMAVEKDIVDKSGSWYSYGEDRIGQGRENAKQYLADHPDMMAEVNQ
RVRAAYGVGDEEAAATKATETKTDAPKDKDKGKTKAKDKPADVTPGQIELAPDKSAK

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=26461 LVIS_RS17560 WP_011667973.1 1210628..1211761(-) (recA) [Levilactobacillus brevis ATCC 367]
ATGGCTGACGAACGACAAGCGGCGCTGGATAAAGCGCTGAAGAAGATTGAAAAAGACTTTGGTAAAGGCTCGATTATGCG
ATTAGGGGACAATAGTAACCTCGAAGTTGAGACCGTACCATCAGGCTCGTTAGCACTTGACGTTGCCTTGGGTGTCGGCG
GTTACCCTCGCGGACGGATTGTAGAAATTTATGGTCCAGAATCTTCTGGGAAGACGACCGTTGCTCTGCACGCAGTTGCC
GAGGTCCAAAAGCGTGGTGGAACAGCCGCCTATATTGATGCTGAAAATGCGTTGGATCCAGCCTATGCAACGGCATTAGG
GGTTAACATTGATGATTTATTGCTGTCGCAGCCAGATACTGGGGAACAAGGCTTGCAAATCGCTGATGCCTTGATTTCCA
GTGGTGCGATTGACATTGTCGTGGTTGATTCCGTGGCAGCCTTAGTGCCACGTGCTGAAATTGAAGGCGAAATGGGTGAT
GCTCACGTGGGTCTGCAAGCCCGGTTGATGTCACAAGCCTTACGGAAGCTATCTGGGACCATCAATAAAACGAAGACAAT
CGCGTTATTTATCAATCAGATTCGGGAAAAAGTTGGTGTGATGTTTGGTAATCCAGAGACCACACCAGGTGGCCGGGCAC
TGAAATTCTATGCGACAGTGCGGCTAGAGGTACGACGGGCCGAACAGATTAAAGATGGCACGGATGTTATCGGTAACCGG
ACGCGAATCAAGGTCGTTAAGAACAAGGTTGCGCCGCCATTTAAACGGGCCGAAGTTGATATCATGTACGGGCAAGGAAT
CTCACAAACCGGTGAATTGCTCGACATGGCGGTTGAGAAAGATATCGTTGATAAAAGCGGTTCTTGGTATTCTTATGGTG
AAGACCGAATTGGTCAAGGCCGAGAGAATGCCAAACAGTACTTGGCAGATCATCCAGATATGATGGCCGAAGTTAATCAA
CGTGTCCGGGCTGCTTACGGTGTTGGCGATGAAGAAGCCGCAGCGACTAAAGCAACTGAGACGAAGACTGATGCGCCTAA
AGACAAGGATAAAGGGAAGACAAAGGCTAAAGATAAACCGGCCGATGTTACTCCCGGTCAGATTGAGTTAGCACCAGACA
AATCAGCTAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J7LIP1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

83.908

92.308

0.775
  recA Bacillus subtilis subsp. subtilis str. 168

75.61

87.003

0.658
  recA Streptococcus pneumoniae D39

68.946

93.103

0.642
  recA Streptococcus pneumoniae R6

68.946

93.103

0.642
  recA Streptococcus pneumoniae TIGR4

68.946

93.103

0.642
  recA Streptococcus pneumoniae Rx1

68.946

93.103

0.642
  recA Streptococcus mitis SK321

70.554

90.981

0.642
  recA Streptococcus mitis NCTC 12261

70.175

90.716

0.637
  recA Streptococcus mutans UA159

66.947

94.695

0.634
  recA Streptococcus pyogenes NZ131

70.997

87.798

0.623
  recA Lactococcus lactis subsp. cremoris KW2

69.94

89.125

0.623
  recA Neisseria gonorrhoeae MS11

60.057

92.308

0.554
  recA Neisseria gonorrhoeae MS11

60.057

92.308

0.554
  recA Neisseria gonorrhoeae strain FA1090

60.057

92.308

0.554
  recA Ralstonia pseudosolanacearum GMI1000

62.918

87.268

0.549
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.424

87.533

0.546
  recA Vibrio cholerae strain A1552

62.539

85.676

0.536
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.539

85.676

0.536
  recA Pseudomonas stutzeri DSM 10701

57.971

91.512

0.531
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.162

86.737

0.531
  recA Acinetobacter baylyi ADP1

61.61

85.676

0.528
  recA Acinetobacter baumannii D1279779

60.681

85.676

0.52
  recA Glaesserella parasuis strain SC1401

60.125

85.146

0.512
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.359

87.268

0.509
  recA Helicobacter pylori 26695

56.97

87.533

0.499
  recA Helicobacter pylori strain NCTC11637

56.97

87.533

0.499

Multiple sequence alignment