Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CF003_RS11520 Genome accession   NZ_CP025932
Coordinates   180315..181055 (+) Length   246 a.a.
NCBI ID   WP_005875257.1    Uniprot ID   A0A0E2LU95
Organism   Porphyromonas gingivalis strain W83     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 175315..186055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF003_RS11500 (CF003_0153) aspS 175757..177520 (-) 1764 WP_005875297.1 aspartate--tRNA ligase -
  CF003_RS22390 - 177706..177954 (-) 249 WP_143733557.1 DUF1661 domain-containing protein -
  CF003_RS11505 (CF003_0155) ribD 177951..178943 (-) 993 WP_005875259.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  CF003_RS11510 (CF003_0156) prmC 178968..179849 (+) 882 WP_005875312.1 peptide chain release factor N(5)-glutamine methyltransferase -
  CF003_RS11515 (CF003_0157) - 179846..180331 (+) 486 WP_004583801.1 regulatory protein RecX -
  CF003_RS11520 (CF003_0158) comF 180315..181055 (+) 741 WP_005875257.1 ComF family protein Machinery gene
  CF003_RS11525 (CF003_0159) - 181185..183254 (-) 2070 WP_005875347.1 M13 family metallopeptidase -
  CF003_RS11530 (CF003_0160) - 183273..184175 (-) 903 WP_005875328.1 nucleotidyltransferase family protein -
  CF003_RS21565 - 184357..184497 (-) 141 WP_155115946.1 hypothetical protein -
  CF003_RS11535 (CF003_0162) - 184595..185176 (-) 582 WP_004583806.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27475.95 Da        Isoelectric Point: 10.0451

>NTDB_id=264503 CF003_RS11520 WP_005875257.1 180315..181055(+) (comF) [Porphyromonas gingivalis strain W83]
MRKTANGTGRHIRLLIRKVLDLFFPRYCPVCDSLLAETEIGVCPRCMVRMPRYIEGMQYGLDRLNGDVYIDALYSLFIFK
EDGGVRPMIHALKYGGYSEIGEMLGRMAGRSYPFLSKDYDLIVPVPLHPRKQRKRGYNQALLIAQGLSRVTGIPVQEGLR
RKVYTDSQTGQSYSERKSAMKGKFALSPNTRVAGIRVLLVDDVLTTGATVQAAAEPLAEAFAAKIGVLVAAVTKRPSNWS
HYSDER

Nucleotide


Download         Length: 741 bp        

>NTDB_id=264503 CF003_RS11520 WP_005875257.1 180315..181055(+) (comF) [Porphyromonas gingivalis strain W83]
ATGAGGAAGACAGCTAACGGTACGGGCCGGCATATCCGATTGCTGATTCGTAAGGTGTTGGATCTGTTTTTCCCTCGCTA
TTGTCCTGTATGCGACAGCTTGCTCGCCGAGACGGAGATCGGGGTCTGTCCTCGTTGCATGGTGAGAATGCCACGGTATA
TCGAAGGGATGCAATATGGATTAGATCGTCTGAATGGGGATGTTTATATCGACGCGCTGTACAGCCTTTTTATTTTCAAA
GAGGACGGGGGTGTAAGGCCTATGATACACGCACTAAAATATGGAGGATACAGTGAGATCGGCGAAATGCTCGGACGAAT
GGCCGGCCGATCCTATCCTTTCCTGTCCAAGGATTACGATCTGATAGTGCCGGTTCCTTTACACCCACGCAAACAACGTA
AGCGTGGCTACAATCAGGCACTCCTCATCGCACAAGGATTAAGTCGCGTAACGGGAATACCTGTTCAAGAAGGTTTGCGC
AGAAAGGTATATACGGACAGTCAGACCGGACAGTCCTATTCGGAACGAAAGTCAGCCATGAAAGGGAAGTTTGCCCTCTC
CCCGAATACGCGCGTGGCCGGTATCCGTGTTCTTTTGGTGGACGATGTGCTGACTACCGGGGCTACGGTACAAGCTGCGG
CCGAGCCATTGGCAGAAGCCTTTGCGGCCAAGATCGGTGTATTGGTGGCAGCCGTTACCAAGCGTCCCTCGAATTGGTCT
CATTATTCTGATGAGCGATAG

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Porphyromonas gingivalis W83

100

100

1

Multiple sequence alignment