Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DV167_RS03775 Genome accession   NZ_CP031329
Coordinates   677002..677619 (-) Length   205 a.a.
NCBI ID   WP_002217147.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22425     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 672002..682619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV167_RS03755 recD 672716..674461 (-) 1746 WP_002251291.1 exodeoxyribonuclease V subunit alpha Machinery gene
  DV167_RS03760 lolD 674529..675224 (-) 696 WP_002213504.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  DV167_RS03765 - 675217..676464 (-) 1248 WP_002213503.1 lipoprotein-releasing ABC transporter permease subunit -
  DV167_RS03770 - 676668..676946 (+) 279 WP_002220967.1 hypothetical protein -
  DV167_RS03775 recR 677002..677619 (-) 618 WP_002217147.1 recombination mediator RecR Machinery gene
  DV167_RS03780 - 677686..679224 (-) 1539 WP_002237006.1 SurA N-terminal domain-containing protein -
  DV167_RS03785 - 679304..679657 (-) 354 WP_002227306.1 arsenate reductase -
  DV167_RS03790 - 679747..681435 (+) 1689 WP_175274840.1 ABC-F family ATPase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22358.74 Da        Isoelectric Point: 6.2234

>NTDB_id=264387 DV167_RS03775 WP_002217147.1 677002..677619(-) (recR) [Neisseria meningitidis strain M22425]
MSHKKQDAFQGLIDALKVLPNVGPKSAQRIAYHLLQHKRKEAEKLVDALQTALKQVYHCAMCNTFCEGGLCDICADETRD
GRRLMVVHMPADVSNMEAANCHDGLYFVLMGQINTALGMDVSAIALDRLAQRLGGGEVEEIIIATAFTAEGNATAYVLSE
FFKNLPYKVSRLSQGIPLGGELEYVDAGTLAQAVYERRLIKEGGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=264387 DV167_RS03775 WP_002217147.1 677002..677619(-) (recR) [Neisseria meningitidis strain M22425]
ATGAGCCACAAAAAACAAGATGCCTTCCAAGGATTGATCGACGCGCTGAAGGTTTTACCCAACGTCGGGCCGAAATCGGC
ACAGCGGATAGCGTATCATTTGCTCCAACACAAGCGCAAAGAGGCTGAAAAACTGGTGGATGCCTTGCAGACGGCATTGA
AGCAGGTTTACCATTGCGCGATGTGCAACACGTTTTGCGAAGGCGGATTGTGCGATATTTGTGCCGATGAAACACGCGAC
GGGCGGCGGCTGATGGTGGTGCATATGCCTGCCGACGTGTCGAATATGGAAGCGGCAAACTGCCACGACGGGCTGTATTT
CGTCCTGATGGGGCAAATCAATACGGCATTGGGAATGGACGTATCCGCCATCGCATTGGACAGGCTGGCGCAACGGCTGG
GCGGCGGGGAAGTCGAAGAAATCATTATTGCAACCGCTTTTACCGCAGAAGGCAATGCGACGGCGTATGTCCTGTCCGAG
TTTTTTAAAAACCTGCCTTACAAAGTCAGCAGGCTGTCGCAGGGCATCCCCTTGGGCGGCGAATTGGAATATGTCGATGC
GGGAACGCTGGCGCAGGCGGTGTACGAACGCCGCCTGATTAAAGAAGGCGGGGCATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.688

97.073

0.366