Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DV175_RS10295 Genome accession   NZ_CP031324
Coordinates   1724417..1725034 (-) Length   205 a.a.
NCBI ID   WP_002217147.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M23347     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1719417..1730034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV175_RS10275 recD 1720131..1721876 (-) 1746 WP_061837676.1 exodeoxyribonuclease V subunit alpha Machinery gene
  DV175_RS10280 lolD 1721944..1722639 (-) 696 WP_002217149.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  DV175_RS10285 - 1722632..1723879 (-) 1248 WP_002217148.1 lipoprotein-releasing ABC transporter permease subunit -
  DV175_RS10290 - 1724083..1724361 (+) 279 WP_002213502.1 hypothetical protein -
  DV175_RS10295 recR 1724417..1725034 (-) 618 WP_002217147.1 recombination mediator RecR Machinery gene
  DV175_RS10300 - 1725101..1726639 (-) 1539 WP_002237006.1 SurA N-terminal domain-containing protein -
  DV175_RS10305 - 1726699..1727073 (-) 375 WP_002229491.1 arsenate reductase -
  DV175_RS10310 - 1727163..1728851 (+) 1689 WP_179099268.1 ABC-F family ATPase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22358.74 Da        Isoelectric Point: 6.2234

>NTDB_id=264209 DV175_RS10295 WP_002217147.1 1724417..1725034(-) (recR) [Neisseria meningitidis strain M23347]
MSHKKQDAFQGLIDALKVLPNVGPKSAQRIAYHLLQHKRKEAEKLVDALQTALKQVYHCAMCNTFCEGGLCDICADETRD
GRRLMVVHMPADVSNMEAANCHDGLYFVLMGQINTALGMDVSAIALDRLAQRLGGGEVEEIIIATAFTAEGNATAYVLSE
FFKNLPYKVSRLSQGIPLGGELEYVDAGTLAQAVYERRLIKEGGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=264209 DV175_RS10295 WP_002217147.1 1724417..1725034(-) (recR) [Neisseria meningitidis strain M23347]
ATGAGCCACAAAAAACAAGATGCCTTCCAAGGATTGATCGACGCGCTGAAGGTTTTACCCAACGTCGGGCCGAAATCGGC
ACAGCGGATAGCGTATCATTTGCTCCAACACAAGCGCAAAGAGGCTGAAAAACTGGTGGATGCCTTGCAGACGGCATTGA
AGCAGGTTTACCATTGCGCGATGTGCAACACGTTTTGCGAAGGCGGATTGTGCGATATTTGTGCCGATGAAACACGCGAC
GGGCGGCGGCTGATGGTGGTGCATATGCCTGCCGACGTGTCGAATATGGAAGCGGCAAACTGCCACGACGGGCTGTATTT
CGTCCTGATGGGGCAAATCAATACGGCATTGGGAATGGACGTATCCGCCATCGCATTGGACAGGCTGGCGCAACGGCTGG
GCGGCGGGGAAGTCGAAGAAATCATTATTGCAACCGCTTTTACCGCAGAAGGCAATGCGACGGCGTATGTCCTGTCCGAG
TTTTTTAAAAACCTGCCTTACAAAGTCAGCAGGCTGTCGCAGGGCATCCCCTTGGGCGGCGAATTGGAATATGTCGATGC
GGGAACGCTGGCGCAGGCGGTGTACGAACGCCGCCTGATTAAAGAAGGCGGGGCATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.688

97.073

0.366