Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   C1S76_RS10205 Genome accession   NZ_CP025796
Coordinates   2133048..2133773 (+) Length   241 a.a.
NCBI ID   WP_045414262.1    Uniprot ID   -
Organism   Vibrio owensii strain 051011B     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2128048..2138773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S76_RS10190 - 2129173..2131494 (+) 2322 WP_045414260.1 Tex family protein -
  C1S76_RS10195 - 2131599..2132063 (-) 465 WP_005430182.1 hypothetical protein -
  C1S76_RS10200 bioH 2132199..2132963 (-) 765 WP_045414328.1 pimeloyl-ACP methyl ester esterase BioH -
  C1S76_RS10205 comF 2133048..2133773 (+) 726 WP_045414262.1 amidophosphoribosyltransferase Machinery gene
  C1S76_RS10210 nfuA 2133871..2134455 (+) 585 WP_005434470.1 Fe-S biogenesis protein NfuA -
  C1S76_RS10215 nudE 2134630..2135193 (+) 564 WP_005434477.1 ADP compounds hydrolase NudE -
  C1S76_RS10220 cysQ 2135238..2136065 (+) 828 WP_005434478.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  C1S76_RS10225 - 2136353..2137114 (-) 762 WP_045414264.1 type II secretion system protein N -
  C1S76_RS10230 - 2137116..2137607 (-) 492 WP_009707965.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27617.76 Da        Isoelectric Point: 8.5027

>NTDB_id=263878 C1S76_RS10205 WP_045414262.1 2133048..2133773(+) (comF) [Vibrio owensii strain 051011B]
MLSHQWQNIMHRVLGSQCGLCRFPISAEQKPNPMRWCDRCFEHLTPIKRCTRCGLKMTEEESQTSTECGGCLKEPPPWQR
LYTLGDYDFPLSNQVQRFKDHGEAWHVGALTQLLAERIEQQAPVITCVPIHWQRYLKRGFNQSHILAKHLAHHLNVRYED
KVFKRVKSVQSQRGNKKASREQNLKGAFTLQGEVNFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=263878 C1S76_RS10205 WP_045414262.1 2133048..2133773(+) (comF) [Vibrio owensii strain 051011B]
ATGTTATCTCATCAATGGCAAAACATCATGCACCGCGTACTTGGCAGCCAATGTGGTTTGTGCCGATTTCCGATCTCCGC
TGAACAGAAACCAAACCCAATGCGCTGGTGTGACCGTTGTTTTGAACACCTCACGCCCATCAAACGCTGCACTCGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAAACCTCAACAGAGTGCGGTGGGTGCCTGAAAGAGCCACCTCCTTGGCAACGT
TTATATACGTTAGGGGATTATGATTTCCCTCTGTCTAACCAAGTGCAACGCTTTAAAGATCATGGTGAGGCATGGCATGT
CGGCGCACTCACTCAATTGCTGGCCGAACGAATTGAACAGCAAGCTCCAGTGATTACTTGTGTACCAATACATTGGCAAC
GTTATTTAAAACGAGGATTTAACCAAAGCCATATCTTAGCCAAACACCTCGCCCACCATTTAAATGTGCGATATGAAGAT
AAGGTATTCAAACGCGTTAAAAGCGTCCAATCGCAACGAGGAAACAAAAAAGCCAGTCGTGAGCAGAATTTAAAAGGGGC
GTTTACCCTACAAGGTGAGGTGAACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCGGGCTCA
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

88.382

100

0.884
  comF Vibrio cholerae strain A1552

47.059

98.755

0.465

Multiple sequence alignment