Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   C1S74_RS10050 Genome accession   NZ_CP025794
Coordinates   2033774..2034499 (+) Length   241 a.a.
NCBI ID   WP_045399437.1    Uniprot ID   -
Organism   Vibrio hyugaensis strain 090810a     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2028774..2039499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S74_RS10035 - 2029900..2032221 (+) 2322 WP_045399434.1 Tex family protein -
  C1S74_RS10040 - 2032325..2032789 (-) 465 WP_005430182.1 hypothetical protein -
  C1S74_RS10045 bioH 2032925..2033689 (-) 765 WP_045399571.1 pimeloyl-ACP methyl ester esterase BioH -
  C1S74_RS10050 comF 2033774..2034499 (+) 726 WP_045399437.1 amidophosphoribosyltransferase Machinery gene
  C1S74_RS10055 nfuA 2034597..2035181 (+) 585 WP_038870077.1 Fe-S biogenesis protein NfuA -
  C1S74_RS10060 nudE 2035372..2035941 (+) 570 WP_038876989.1 ADP compounds hydrolase NudE -
  C1S74_RS10065 cysQ 2035986..2036813 (+) 828 WP_038870073.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  C1S74_RS10070 - 2037102..2037863 (-) 762 WP_038870071.1 type II secretion system protein N -
  C1S74_RS10075 - 2037865..2038356 (-) 492 WP_045399440.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27512.44 Da        Isoelectric Point: 8.4392

>NTDB_id=263831 C1S74_RS10050 WP_045399437.1 2033774..2034499(+) (comF) [Vibrio hyugaensis strain 090810a]
MLSDQWQNIMHRVLGSQCGLCRFPISPDQQPNLMRWCDSCFHHLTLRKRCSRCGLTMTEEAFQTSAECGECLKEPPPWQR
LYTLGDYDFPLSHQVQRFKDHGESWHVTALTQLLAERIEHPAPIITSVPLHWQRYLKRGFNQSHVLATHLAHNLNSNYRN
RVFKRVKSAQSQRGNKKAGREQNLKAAFALHGEVNFSHIAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=263831 C1S74_RS10050 WP_045399437.1 2033774..2034499(+) (comF) [Vibrio hyugaensis strain 090810a]
ATGTTATCTGATCAATGGCAAAACATCATGCACCGCGTGCTTGGCAGTCAATGCGGGCTATGCCGTTTTCCAATCTCCCC
CGACCAGCAGCCTAACTTAATGCGCTGGTGCGACAGCTGTTTTCATCACCTCACACTCCGCAAACGCTGTTCACGGTGCG
GATTAACAATGACAGAGGAAGCATTCCAAACGTCAGCAGAATGCGGAGAATGCCTCAAAGAACCGCCACCATGGCAAAGG
TTATACACATTGGGGGATTATGATTTCCCCCTTTCTCATCAAGTACAACGCTTTAAGGATCATGGTGAATCTTGGCATGT
TACCGCCCTAACTCAATTGTTAGCGGAACGAATCGAGCATCCTGCTCCTATCATTACGAGTGTCCCTTTGCATTGGCAAC
GTTACTTAAAGCGAGGATTTAATCAGAGTCATGTCTTGGCGACACATTTAGCGCACAACTTGAATAGCAACTATCGCAAT
CGGGTTTTTAAACGCGTCAAAAGCGCACAATCTCAACGTGGAAATAAAAAAGCCGGTCGCGAGCAAAATTTGAAAGCAGC
ATTTGCCCTACACGGTGAGGTAAACTTTTCCCACATTGCTATCGTGGACGATGTTGTCACAACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCTGGTTCA
GGCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

82.5

99.585

0.822
  comF Vibrio cholerae strain A1552

46.639

98.755

0.461

Multiple sequence alignment