Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   C1S73_RS09820 Genome accession   NZ_CP025792
Coordinates   2080666..2081391 (+) Length   241 a.a.
NCBI ID   WP_038870079.1    Uniprot ID   A0A2A2N5E6
Organism   Vibrio jasicida 090810c     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2075666..2086391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S73_RS09805 - 2076754..2079075 (+) 2322 WP_038870083.1 Tex family protein -
  C1S73_RS09810 - 2079217..2079681 (-) 465 WP_038870081.1 hypothetical protein -
  C1S73_RS09815 bioH 2079817..2080581 (-) 765 WP_038870125.1 pimeloyl-ACP methyl ester esterase BioH -
  C1S73_RS09820 comF 2080666..2081391 (+) 726 WP_038870079.1 amidophosphoribosyltransferase Machinery gene
  C1S73_RS09825 nfuA 2081489..2082073 (+) 585 WP_038870077.1 Fe-S biogenesis protein NfuA -
  C1S73_RS09830 nudE 2082264..2082833 (+) 570 WP_038870075.1 ADP compounds hydrolase NudE -
  C1S73_RS09835 cysQ 2082878..2083705 (+) 828 WP_038870073.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  C1S73_RS09840 - 2083994..2084755 (-) 762 WP_038870071.1 type II secretion system protein N -
  C1S73_RS09845 - 2084757..2085248 (-) 492 WP_038870069.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27504.50 Da        Isoelectric Point: 8.7164

>NTDB_id=263782 C1S73_RS09820 WP_038870079.1 2080666..2081391(+) (comF) [Vibrio jasicida 090810c]
MLSDQWQNIMHRVLGNQCGLCRFPISAEQKPNPMRWCDHCFEHLTPIKRCTRCGLKMTEKASQTSTECGECLKEPPPWQR
LYTLGDYDFPLSHQVQRFKDNGESWHVTALTQLLAERIEHPAPIITSVPLHWQRYLKRGFNQSHVLATHLAHHLNSNYRN
RVFKRVKSAQSQRGNKKAGREQNLKAAFALHGEVNFSHIAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=263782 C1S73_RS09820 WP_038870079.1 2080666..2081391(+) (comF) [Vibrio jasicida 090810c]
ATGTTATCTGATCAATGGCAAAACATCATGCACCGTGTACTTGGCAATCAATGCGGTTTGTGTCGATTTCCGATTTCCGC
TGAACAGAAACCAAACCCAATGCGTTGGTGCGACCATTGTTTTGAACACCTTACACCCATCAAACGGTGCACTCGCTGTG
GTTTAAAAATGACAGAGAAGGCGTCACAAACCTCCACGGAGTGCGGTGAGTGCCTGAAAGAGCCACCGCCTTGGCAACGT
TTGTATACGTTGGGAGATTATGATTTCCCCCTTTCTCATCAAGTACAACGTTTTAAGGATAATGGTGAATCTTGGCATGT
TACCGCCCTAACTCAATTGTTAGCGGAACGAATCGAGCATCCTGCCCCTATCATTACTAGTGTCCCTTTGCATTGGCAAC
GTTACTTAAAGCGAGGATTTAATCAGAGTCATGTCTTAGCGACACATTTAGCGCACCACTTGAATAGCAACTATCGCAAT
CGCGTTTTTAAACGCGTCAAAAGCGCACAATCTCAACGTGGAAATAAAAAAGCAGGTCGCGAGCAAAATTTGAAAGCAGC
ATTTGCCCTACACGGTGAGGTAAACTTTTCCCACATTGCTATCGTGGACGATGTTGTCACAACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCTGGTTCA
GGCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A2N5E6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

82.917

99.585

0.826
  comF Vibrio cholerae strain A1552

47.059

98.755

0.465

Multiple sequence alignment