Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   APL_RS02255 Genome accession   NC_009053
Coordinates   494439..495779 (+) Length   446 a.a.
NCBI ID   WP_011848376.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae serovar 5b str. L20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 489439..500779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APL_RS02230 (APL_0433) msrB 489902..490297 (-) 396 WP_005620040.1 peptide-methionine (R)-S-oxide reductase MsrB -
  APL_RS02235 (APL_0434) gap 490520..491524 (+) 1005 WP_005620042.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  APL_RS02240 (APL_0435) - 491720..492772 (+) 1053 WP_005607179.1 rod shape-determining protein -
  APL_RS02245 (APL_0436) mreC 492889..493938 (+) 1050 WP_005596505.1 rod shape-determining protein MreC -
  APL_RS02250 (APL_0437) mreD 493938..494426 (+) 489 WP_005596506.1 rod shape-determining protein MreD -
  APL_RS02255 (APL_0438) rarA 494439..495779 (+) 1341 WP_011848376.1 replication-associated recombination protein A Machinery gene
  APL_RS02260 (APL_0439) znuB 495860..496645 (+) 786 WP_005596508.1 zinc ABC transporter permease subunit ZnuB -
  APL_RS02265 (APL_0440) - 496824..497621 (+) 798 WP_009875079.1 class II glutamine amidotransferase -
  APL_RS02270 (APL_0441) - 497701..498777 (-) 1077 WP_011848377.1 homoserine O-acetyltransferase -
  APL_RS02275 (APL_0442) - 499069..499758 (+) 690 WP_009875081.1 vancomycin high temperature exclusion protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50304.92 Da        Isoelectric Point: 6.6447

>NTDB_id=26368 APL_RS02255 WP_011848376.1 494439..495779(+) (rarA) [Actinobacillus pleuropneumoniae serovar 5b str. L20]
MSSLSFDFSEDFRPLPARMRPRTLAEYIGQAHLIEEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIAHHFDAEVERL
SAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRAKIYI
LKPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMAEISSQGKRLNKALLAEVLG
ERQARFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILTAGGDPLYVARRLLAIASEDIGNADPRAMQVAINAWDCYT
RVGAYEGERAIAQAVIYLAVAPKSNAVYNAFNEAKRLAKEGKDYDVPEHLRNAPTKLMKSLGYGEEYRYAHHEPNAYAAG
ENYFPPELKDTVFYHPTERGMEKQIKEKLQWLNAQDQASLQQRYKR

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=26368 APL_RS02255 WP_011848376.1 494439..495779(+) (rarA) [Actinobacillus pleuropneumoniae serovar 5b str. L20]
ATGAGTAGTTTGTCCTTTGATTTTTCAGAAGATTTTAGACCGCTGCCCGCCAGAATGCGTCCACGCACACTGGCGGAGTA
TATCGGGCAAGCTCATCTTATCGAAGAAGGTAAACCGCTACGCCGCGCGATAGAAGCGGGACATTCCCATTCCATGATCT
TCTGGGGGCCTCCCGGTACCGGTAAAACGACATTAGCGGAAATTATCGCGCATCATTTTGATGCGGAAGTGGAACGCCTT
TCTGCGGTTACCAGCGGTGTGAAAGAAATCAGAGAAGCGATAGAGCGGGCTAAGCTCAATCGACAAACCGGCAGACGAAC
ATTACTTTTTGTCGATGAAGTACACCGTTTTAATAAAAGCCAACAAGACGCTTTTCTGCCGCATATTGAAGACGGCACCA
TTATTTTTATCGGTGCGACAACCGAGAATCCATCCTTTGAATTAAATAACGCCTTACTTTCCCGTGCGAAAATCTATATT
TTAAAACCGTTGCAAGCGGTTGAAATTGCACAAGTTTTAACTAATGCGCTTTACGATAAAGAACGAGGCTTAGGTAATGA
AAGCTATTACATCGAAGATAATGTGATTGAATTACTCGCCGATTATGTAAATGGAGATGCAAGATTTGCCTTAAATTGCT
TAGAGTTAATGTCGGATATGGCGGAAATATCCTCTCAAGGAAAACGTCTGAATAAAGCGTTATTGGCTGAAGTTTTAGGA
GAGCGACAAGCGCGCTTTGATAAAGGCGGCGATCGTTACTATGATTTAATCTCGGCATTGCATAAGTCGGTACGGGGCTC
ATCACCGGACGGGGCGTTGTATTGGTATGCGAGAATTTTAACCGCAGGCGGAGATCCTTTGTATGTTGCGCGCCGATTAC
TGGCAATCGCTTCGGAAGATATTGGCAATGCTGACCCTAGAGCGATGCAAGTTGCGATTAACGCTTGGGATTGCTATACC
CGAGTCGGGGCTTACGAAGGTGAAAGAGCGATTGCGCAAGCGGTGATTTATTTGGCGGTTGCGCCAAAAAGCAATGCGGT
TTATAACGCTTTCAATGAAGCGAAACGTCTTGCGAAAGAGGGCAAAGATTACGATGTACCGGAACATCTGCGCAATGCAC
CGACTAAGTTGATGAAATCGTTAGGTTACGGTGAAGAATATCGTTACGCACATCATGAACCGAACGCTTATGCCGCCGGC
GAAAACTACTTCCCGCCGGAATTAAAAGATACGGTATTTTATCACCCGACGGAACGGGGAATGGAAAAACAAATTAAGGA
AAAATTGCAGTGGCTTAATGCACAGGATCAAGCCAGCTTACAACAACGTTACAAGCGGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(266-432)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(19-143)

AAA C-terminal domain (AAA_assoc_2)

(186-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.898

94.843

0.388