Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DV130_RS01050 Genome accession   NZ_CP031248
Coordinates   189965..191713 (+) Length   582 a.a.
NCBI ID   WP_050088037.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M26365     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 184965..196713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV130_RS01030 thrB 186079..186948 (+) 870 WP_000692438.1 homoserine kinase -
  DV130_RS12305 - 187024..187176 (+) 153 WP_001835993.1 hypothetical protein -
  DV130_RS01040 msrB 187243..188181 (+) 939 WP_000818203.1 peptide-methionine (R)-S-oxide reductase MsrB -
  DV130_RS01045 - 188239..189963 (+) 1725 WP_000681707.1 ABC transporter ATP-binding protein -
  DV130_RS01050 rcrQ 189965..191713 (+) 1749 WP_050088037.1 ABC transporter ATP-binding protein Regulator
  DV130_RS01055 - 191970..193229 (+) 1260 WP_050083553.1 TRZ/ATZ family protein -
  DV130_RS01065 rplJ 193479..193979 (+) 501 WP_001287278.1 50S ribosomal protein L10 -
  DV130_RS01070 rplL 194055..194423 (+) 369 WP_001196960.1 50S ribosomal protein L7/L12 -
  DV130_RS12050 - 194610..194780 (+) 171 WP_001168348.1 hypothetical protein -
  DV130_RS01080 - 194780..195031 (+) 252 Protein_205 replication initiator protein A -
  DV130_RS01085 - 195018..195365 (+) 348 Protein_206 hypothetical protein -
  DV130_RS01090 - 195358..195738 (+) 381 WP_000566531.1 arsenate reductase family protein -
  DV130_RS12310 - 195751..195984 (+) 234 Protein_208 transcriptional regulator -
  DV130_RS01095 - 195987..196574 (+) 588 WP_050072242.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 64927.50 Da        Isoelectric Point: 7.3120

>NTDB_id=263334 DV130_RS01050 WP_050088037.1 189965..191713(+) (rcrQ) [Streptococcus pneumoniae strain M26365]
MKRQTVNQTLKRLVVDLANHPFLLFLAFLGTIAQVGLSIYLPILIGQVIDQVLVAGSSPVFWQIFLQMLLVVIGNTLVQW
ANPLLYNRLIFSYTRDLRERIIHKLHRLPIAFADRQGNGEMVSRVTTDIEQLAAGLTMIFNQFFIGVLMILVSILAMLQI
HLLMTLLVLLLTPLSMVISRFIAKRSYHLFQKQTETRGIQTQLIEESLSQQTIIQSFNAQTEFIQRLREAHDNYSGYSQS
AIFYSSTVNPSTRFVNALIYALLAGVGAYRIMMGSTLTVGRLVTFLNYVQQYTKPFNDISSVLAELQSALACVERIYGVL
DSPEVAETGKEVLTSDQVKGAISFKHVSFGYHPEKILIKDLSIDIPAGSKVAIVGPTGAGKSTLINLLMRFYPISSGDIL
LDGQSIYDYTRVSLRQQFGMVLQETWLTQGIIHDNIAFGNPEASREQVIAAAKAANADFFIQQLPQGYDTKLENAGESLS
VGQAQLLTIARVFLAIPKILILDEATSSIDTRTEVLVQDAFVKLMKGRTSFIIAHRLSTIQDADLILVLVDGDIVEYGNH
QELMDRKGKYYQMQKAAAFSSE

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=263334 DV130_RS01050 WP_050088037.1 189965..191713(+) (rcrQ) [Streptococcus pneumoniae strain M26365]
ATGAAACGACAAACTGTAAACCAGACACTCAAACGTTTAGTCGTAGATTTAGCAAACCATCCCTTCCTCCTTTTCCTAGC
CTTTCTAGGAACTATTGCCCAAGTTGGCTTATCAATTTACCTACCTATTCTGATTGGGCAGGTCATTGACCAAGTCCTAG
TGGCTGGTTCATCACCAGTTTTTTGGCAGATTTTTCTCCAGATGCTCTTGGTGGTAATAGGAAATACTCTGGTACAATGG
GCCAATCCTCTCCTCTATAATCGTCTAATCTTCTCTTATACCAGAGATTTACGGGAGCGAATCATCCATAAACTCCATCG
GTTACCGATTGCTTTTGCGGATCGGCAAGGCAATGGAGAGATGGTCAGTCGTGTAACCACGGATATCGAACAGTTGGCAG
CTGGCTTGACCATGATTTTTAACCAATTTTTCATTGGTGTTTTGATGATTTTGGTTAGTATTCTAGCCATGCTCCAAATT
CATCTCCTCATGACTCTCTTAGTCTTGCTGTTGACGCCACTGTCCATGGTGATTTCACGCTTTATTGCCAAGAGATCCTA
TCATCTCTTCCAGAAGCAAACAGAGACGAGGGGAATTCAGACTCAGTTGATTGAAGAATCGCTTAGCCAGCAGACTATAA
TCCAGTCCTTCAATGCTCAAACAGAATTTATCCAAAGATTGCGTGAGGCTCATGACAACTACTCAGGCTATTCTCAGTCA
GCCATCTTTTATTCTTCAACGGTCAATCCTTCGACTCGCTTTGTAAATGCACTCATTTATGCCCTTTTAGCTGGAGTAGG
AGCTTATCGTATCATGATGGGTTCAACCTTGACTGTCGGTCGTTTAGTGACTTTTTTGAACTATGTTCAGCAATACACCA
AGCCCTTTAACGATATTTCTTCAGTGCTAGCTGAGTTGCAAAGTGCTCTGGCTTGCGTAGAGCGTATCTATGGAGTCTTA
GATAGCCCTGAAGTGGCTGAAACAGGTAAGGAAGTCTTGACCAGTGACCAAGTTAAGGGAGCTATTTCCTTTAAACATGT
CTCTTTTGGCTACCATCCTGAAAAAATTTTGATTAAGGACTTGTCTATCGATATTCCAGCTGGTAGTAAGGTAGCCATCG
TTGGTCCGACAGGTGCTGGAAAATCAACTCTTATCAATCTCCTTATGCGTTTTTATCCCATTAGCTCGGGAGATATCTTG
CTGGATGGGCAATCCATTTATGATTATACACGAGTATCATTGAGACAGCAGTTTGGTATGGTGCTTCAAGAAACCTGGCT
CACACAAGGGATCATTCATGATAATATTGCCTTTGGCAATCCTGAAGCCAGTCGAGAGCAAGTAATTGCTGCTGCCAAAG
CAGCTAATGCAGACTTTTTCATTCAACAGTTGCCACAGGGATACGATACCAAGTTGGAAAATGCTGGAGAATCTCTCTCT
GTCGGCCAAGCTCAGCTCTTGACCATAGCCCGAGTCTTTCTGGCTATTCCAAAGATTCTTATCTTAGACGAGGCAACTTC
TTCCATTGATACACGGACAGAAGTGCTGGTACAGGATGCCTTTGTAAAACTCATGAAGGGCCGCACAAGTTTCATCATTG
CTCACCGTTTGTCAACCATTCAGGATGCGGATTTAATTCTTGTCTTAGTAGATGGTGATATTGTTGAATATGGTAACCAT
CAAGAACTCATGGATAGAAAGGGTAAGTATTACCAAATGCAAAAAGCTGCGGCTTTTAGTTCTGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(359-507)

ABC transporter transmembrane region (ABC_membrane)

(24-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

37.367

96.564

0.361