Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   SSA_RS01865 Genome accession   NC_009009
Coordinates   341942..344308 (-) Length   788 a.a.
NCBI ID   WP_011836452.1    Uniprot ID   A3CKU9
Organism   Streptococcus sanguinis SK36     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 336942..349308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSA_RS01840 (SSA_0343) dinB 337665..338729 (+) 1065 WP_011836448.1 DNA polymerase IV -
  SSA_RS01845 (SSA_0345) - 338943..339269 (+) 327 WP_011836449.1 hypothetical protein -
  SSA_RS01850 (SSA_0346) - 339588..340382 (+) 795 WP_011836450.1 CPBP family intramembrane glutamic endopeptidase -
  SSA_RS01855 (SSA_0348) - 340428..341174 (+) 747 WP_011836451.1 CPBP family intramembrane glutamic endopeptidase -
  SSA_RS01860 (SSA_0349) - 341250..341888 (+) 639 WP_002907310.1 TetR/AcrR family transcriptional regulator -
  SSA_RS01865 (SSA_0350) recD/recD2/recDB 341942..344308 (-) 2367 WP_011836452.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SSA_RS01870 (SSA_0351) lepB 344368..344997 (-) 630 WP_011836453.1 signal peptidase I -
  SSA_RS01875 (SSA_0352) rnhC 345001..345891 (-) 891 WP_033179112.1 ribonuclease HIII -
  SSA_RS01880 (SSA_0353) - 346080..346370 (+) 291 WP_002896593.1 hypothetical protein -
  SSA_RS01885 (SSA_0354) - 346381..346932 (+) 552 WP_002896592.1 CvpA family protein -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88677.45 Da        Isoelectric Point: 4.5146

>NTDB_id=26258 SSA_RS01865 WP_011836452.1 341942..344308(-) (recD/recD2/recDB) [Streptococcus sanguinis SK36]
MEFYFSGTIERIIFENPSNFFRILLLDIEDTDAEDFEDFEIIVTGSMADVMEGEDYSFWGSLVQHPKYGQQLKISRYERA
KPSSKGLVKYFSSDHFKGIGVKTAQKIVQLYGEDTEDTIDKILAEPEKLTQINGLSAKNREAFVAKLRLNYGTEMVLTKL
AAYGIPNKLAFQIQDTYKEETLDIVEKYPYQLVEDIQGIGFKIADRLAEELGIQSDAPERFRAGLVHTLLTQSMERGDTY
VEARDLLEHTIELLESSRQVELNPSLVADELAHLIEEDKVQNVETKIFENSLFFAEEGIKSNLVRLLEKGEQDCFDADNI
TAAIQQVEENSGISYDSIQKEAIRQAINQKVFILTGGPGTGKTTVINCIIAVYAQLRGLDLRKVNDLPILLAAPTGRAAR
RMNELTGLPSATIHRHLGMTGDDDTSHLDDYLDADFIIVDEFSMVDTWLANQLLSNISSQTKLLIVGDADQLPSVSPGQV
LADLLQIPTIPQTKLETIYRQSEESTIVTLASQIQKGILPADFTEKKADRSYFEARNEHIPPMIEKIASAAIRSGIPAQD
VQVLAPMYRGPAGIDQINNLMQNLINPVEKDELTFEAPDCQYRQGDRVIHLVNDAESNVFNGDLGYISDLLPAKYTDSKQ
DELTIDFDGNELVYQRSEWYKIRLAYAMSIHKSQGSEFPVVILPITKSSHRMLQRNLIYTAITRAKSKLILLGEKAAFDY
AAKNTGTARKTYLRERFEDLKSPPELAHTPVDRLEKAVENYVLTEENFLKIDPLIGLTEEDIHSIFST

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=26258 SSA_RS01865 WP_011836452.1 341942..344308(-) (recD/recD2/recDB) [Streptococcus sanguinis SK36]
ATGGAATTTTACTTTTCAGGAACGATTGAACGTATTATTTTTGAAAATCCCAGCAACTTTTTCCGTATCCTACTCTTAGA
TATTGAGGATACAGATGCCGAGGATTTTGAAGATTTTGAAATCATTGTCACCGGCTCTATGGCAGATGTCATGGAAGGCG
AAGACTACAGCTTCTGGGGCAGTCTTGTCCAGCACCCCAAATATGGCCAGCAACTTAAAATTTCTCGCTATGAGCGAGCA
AAACCCAGCAGTAAAGGCCTAGTAAAATACTTCTCTAGTGACCATTTCAAGGGCATTGGGGTCAAGACTGCTCAAAAAAT
CGTCCAACTCTACGGAGAAGATACCGAGGACACCATTGACAAGATTTTAGCAGAGCCAGAAAAACTGACTCAGATAAACG
GCTTATCAGCTAAGAACCGCGAGGCCTTTGTCGCCAAGCTCAGACTCAACTACGGAACGGAGATGGTACTAACCAAACTG
GCGGCCTACGGCATTCCCAATAAGCTGGCTTTTCAAATCCAGGATACCTACAAGGAAGAAACGCTGGATATTGTCGAAAA
ATATCCCTATCAGCTGGTAGAGGATATTCAGGGGATTGGCTTTAAAATCGCTGACCGCTTGGCAGAAGAACTGGGCATCC
AAAGTGATGCCCCTGAGCGTTTTCGGGCTGGCCTTGTCCACACCTTGCTGACCCAGTCTATGGAGCGGGGAGATACCTAT
GTTGAAGCTCGTGATTTACTAGAGCATACCATCGAGCTCTTAGAAAGCTCACGTCAAGTGGAGCTGAACCCTAGTCTAGT
CGCTGATGAGCTGGCTCATCTGATTGAGGAAGATAAGGTCCAGAATGTAGAAACCAAGATTTTTGAAAACAGCCTATTTT
TTGCTGAGGAAGGGATTAAGAGTAATCTGGTCCGTCTGTTGGAAAAAGGAGAGCAAGACTGCTTTGACGCAGATAACATT
ACTGCGGCTATCCAGCAAGTGGAGGAGAACTCCGGCATCTCCTATGACAGTATCCAAAAAGAAGCCATCCGTCAGGCTAT
CAATCAGAAGGTCTTTATCCTAACCGGCGGACCGGGTACTGGAAAAACTACGGTTATCAACTGTATCATCGCAGTCTATG
CCCAGCTTCGCGGTTTGGATCTGCGAAAGGTCAATGATCTGCCTATTCTGCTAGCGGCTCCCACTGGACGTGCTGCTCGT
CGCATGAACGAATTAACTGGTCTTCCTAGCGCTACTATTCACCGCCATCTGGGGATGACTGGCGATGATGATACCAGCCA
CTTGGACGATTATCTGGATGCTGATTTTATCATCGTGGACGAATTCTCCATGGTCGATACCTGGCTGGCTAATCAACTGC
TCAGCAATATCTCCTCTCAGACCAAGCTCTTGATTGTCGGAGATGCGGACCAGCTGCCCTCTGTCAGTCCAGGTCAGGTA
CTGGCGGACTTGCTGCAGATACCAACTATCCCACAGACCAAGTTGGAAACCATCTATCGGCAGAGCGAGGAGTCTACAAT
TGTCACACTGGCCAGCCAGATTCAGAAGGGCATTTTACCAGCAGACTTTACAGAGAAAAAAGCGGATCGCTCTTATTTTG
AAGCTAGAAATGAGCATATCCCGCCTATGATTGAGAAAATCGCTAGCGCAGCCATTCGCAGCGGTATCCCAGCTCAAGAT
GTTCAAGTATTGGCACCTATGTATCGGGGGCCAGCCGGCATTGACCAGATTAATAATCTTATGCAAAATCTCATCAATCC
TGTCGAGAAAGATGAACTGACCTTTGAAGCTCCCGACTGTCAGTATCGCCAAGGAGACAGGGTTATTCACTTGGTCAATG
ATGCTGAAAGCAATGTCTTTAACGGTGACTTAGGATATATCAGCGACCTGCTGCCTGCTAAGTACACCGACTCCAAGCAG
GACGAGCTGACCATTGACTTTGATGGCAATGAACTTGTTTATCAGCGTAGCGAGTGGTACAAGATTCGCCTGGCCTACGC
CATGAGTATCCACAAGTCTCAGGGCAGTGAATTTCCCGTGGTCATCTTGCCCATCACCAAGAGCAGTCATCGGATGCTGC
AGCGCAACCTCATCTACACCGCTATCACCCGCGCCAAGAGCAAGTTGATCTTACTTGGGGAAAAAGCAGCCTTTGACTAT
GCTGCAAAAAACACTGGCACCGCCCGCAAAACCTATCTGAGAGAGCGTTTTGAAGACCTTAAGTCCCCTCCAGAACTTGC
CCACACTCCTGTGGATAGGTTGGAAAAAGCTGTGGAAAACTATGTCCTGACTGAGGAAAATTTCCTGAAAATCGACCCCC
TAATCGGCCTGACCGAGGAAGATATCCACAGTATATTCAGCACATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(665-712)

AAA domain (AAA_30)

(336-525)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(577-647)

Helix-hairpin-helix containing domain (HHH_RecD2)

(151-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3CKU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

40.667

95.178

0.387

Multiple sequence alignment