Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C6669_RS15125 Genome accession   NZ_CP031134
Coordinates   2903402..2903917 (+) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain CFSAN064035     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2898402..2908917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6669_RS15080 (C6669_15080) csrA 2898989..2899174 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  C6669_RS15110 (C6669_15110) yqaB 2900632..2901198 (+) 567 WP_000273305.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C6669_RS15115 (C6669_15115) yqaA 2901195..2901623 (+) 429 WP_001287457.1 YqaA family protein -
  C6669_RS15120 (C6669_15120) gshA 2901696..2903252 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  C6669_RS15125 (C6669_15125) luxS 2903402..2903917 (+) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  C6669_RS15130 (C6669_15130) emrB 2903981..2905519 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  C6669_RS15135 (C6669_15135) emrA 2905536..2906708 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C6669_RS15140 (C6669_15140) emrR 2906835..2907365 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  C6669_RS15145 (C6669_15145) ygaH 2907456..2907791 (-) 336 WP_000119767.1 L-valine transporter subunit YgaH -
  C6669_RS15150 (C6669_15150) ygaZ 2907781..2908518 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=262387 C6669_RS15125 WP_001130210.1 2903402..2903917(+) (luxS) [Escherichia coli strain CFSAN064035]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=262387 C6669_RS15125 WP_001130210.1 2903402..2903917(+) (luxS) [Escherichia coli strain CFSAN064035]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment