Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   LLG50_RS10225 Genome accession   NZ_CP025500
Coordinates   2086993..2087931 (-) Length   312 a.a.
NCBI ID   WP_103055141.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain G50     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2081993..2092931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLG50_RS10200 (LLG50_10200) frr 2082109..2082666 (-) 558 WP_004254618.1 ribosome recycling factor -
  LLG50_RS10205 (LLG50_10205) pyrH 2082879..2083595 (-) 717 WP_021464089.1 UMP kinase -
  LLG50_RS10210 (LLG50_10210) - 2083680..2084132 (-) 453 WP_103055139.1 hypothetical protein -
  LLG50_RS10215 (LLG50_10215) - 2084267..2085454 (-) 1188 WP_103055140.1 acetate kinase -
  LLG50_RS10220 (LLG50_10220) - 2085611..2086798 (-) 1188 WP_023188635.1 acetate kinase -
  LLG50_RS10225 (LLG50_10225) comYH 2086993..2087931 (-) 939 WP_103055141.1 class I SAM-dependent methyltransferase Machinery gene
  LLG50_RS10230 (LLG50_10230) - 2088019..2088270 (-) 252 WP_004254583.1 DUF3165 family protein -
  LLG50_RS10235 (LLG50_10235) typA 2088371..2090203 (-) 1833 WP_025016832.1 translational GTPase TypA -
  LLG50_RS10240 (LLG50_10240) - 2090391..2090849 (-) 459 WP_103055142.1 hypothetical protein -
  LLG50_RS10245 (LLG50_10245) - 2091005..2091631 (-) 627 WP_033900782.1 ABC transporter ATP-binding protein -
  LLG50_RS11875 - 2091632..2092567 (-) 936 WP_234818126.1 DUF1430 domain-containing protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34812.97 Da        Isoelectric Point: 4.3717

>NTDB_id=262108 LLG50_RS10225 WP_103055141.1 2086993..2087931(-) (comYH) [Lactococcus lactis subsp. lactis strain G50]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNAAFLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYLGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=262108 LLG50_RS10225 WP_103055141.1 2086993..2087931(-) (comYH) [Lactococcus lactis subsp. lactis strain G50]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTACTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTTTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCAGATGCAATTGGTTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGCATGGGTAATCTTGCTGAAACGCTTTTAGTTAATCTTAATA
AAAAGGTTGATTATTTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCAGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCGGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGAAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGGCCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487

Multiple sequence alignment