Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | CYK58_RS07510 | Genome accession | NZ_CP025474 |
| Coordinates | 1542111..1542374 (-) | Length | 87 a.a. |
| NCBI ID | WP_000584955.1 | Uniprot ID | K7YLH7 |
| Organism | Helicobacter pylori strain H-137 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1537111..1547374
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CYK58_RS07495 (CYK58_07490) | - | 1538085..1539515 (-) | 1431 | WP_162972184.1 | COG3014 family protein | - |
| CYK58_RS07505 (CYK58_07500) | comB4 | 1539746..1542109 (-) | 2364 | WP_126131544.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| CYK58_RS07510 (CYK58_07505) | comB3 | 1542111..1542374 (-) | 264 | WP_000584955.1 | hypothetical protein | Machinery gene |
| CYK58_RS07515 (CYK58_07510) | comB2 | 1542374..1542655 (-) | 282 | WP_001272686.1 | TrbC/VirB2 family protein | Machinery gene |
| CYK58_RS07520 (CYK58_07515) | - | 1542800..1543627 (-) | 828 | WP_126131545.1 | DUF5718 family protein | - |
| CYK58_RS07525 (CYK58_07520) | - | 1543710..1544762 (-) | 1053 | WP_126131546.1 | MnmA/TRMU family protein | - |
| CYK58_RS07530 (CYK58_07525) | dnaG | 1544759..1546438 (-) | 1680 | WP_126131547.1 | DNA primase | - |
| CYK58_RS07540 (CYK58_07535) | groES | 1546713..1547069 (+) | 357 | WP_101021102.1 | co-chaperone GroES | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10048.12 Da Isoelectric Point: 9.5507
>NTDB_id=261879 CYK58_RS07510 WP_000584955.1 1542111..1542374(-) (comB3) [Helicobacter pylori strain H-137]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=261879 CYK58_RS07510 WP_000584955.1 1542111..1542374(-) (comB3) [Helicobacter pylori strain H-137]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTCGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTCGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
97.701 |
100 |
0.977 |