Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | CYK58_RS03745 | Genome accession | NZ_CP025474 |
| Coordinates | 779098..779361 (-) | Length | 87 a.a. |
| NCBI ID | WP_001177712.1 | Uniprot ID | A0AB33Z5Y9 |
| Organism | Helicobacter pylori strain H-137 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 774098..784361
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CYK58_RS03725 (CYK58_03720) | - | 774983..776146 (-) | 1164 | WP_126131100.1 | VirB8/TrbF family protein | - |
| CYK58_RS08215 (CYK58_03725) | - | 776139..776273 (-) | 135 | WP_041200005.1 | hypothetical protein | - |
| CYK58_RS03735 (CYK58_03730) | - | 776275..778851 (-) | 2577 | WP_126131101.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| CYK58_RS03740 (CYK58_03735) | - | 778851..779087 (-) | 237 | WP_096524574.1 | hypothetical protein | - |
| CYK58_RS03745 (CYK58_03740) | comB3 | 779098..779361 (-) | 264 | WP_001177712.1 | hypothetical protein | Machinery gene |
| CYK58_RS03750 (CYK58_03745) | - | 779372..779657 (-) | 286 | Protein_709 | TrbC/VirB2 family protein | - |
| CYK58_RS03755 (CYK58_03750) | - | 779654..780133 (-) | 480 | WP_126131102.1 | hypothetical protein | - |
| CYK58_RS03760 (CYK58_03755) | - | 780237..781020 (-) | 784 | Protein_711 | integrase | - |
| CYK58_RS03765 (CYK58_03760) | ligA | 781104..783077 (-) | 1974 | WP_126131103.1 | NAD-dependent DNA ligase LigA | - |
| CYK58_RS03770 (CYK58_03765) | - | 783155..784096 (+) | 942 | WP_021307058.1 | chemotaxis protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10002.89 Da Isoelectric Point: 5.7206
>NTDB_id=261868 CYK58_RS03745 WP_001177712.1 779098..779361(-) (comB3) [Helicobacter pylori strain H-137]
MQLVGISVSNLKEISSKEKFLWLNAKSFLIAGFIPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILIAHSKIKT
KTNSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLIAGFIPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILIAHSKIKT
KTNSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=261868 CYK58_RS03745 WP_001177712.1 779098..779361(-) (comB3) [Helicobacter pylori strain H-137]
ATGCAATTAGTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGTTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTAATCGCAGGATTTATTCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGACATTTTAATCGCCCATTCTAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA
ATGCAATTAGTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGTTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTAATCGCAGGATTTATTCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGACATTTTAATCGCCCATTCTAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
59.77 |
100 |
0.598 |