Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CPF_RS02540 Genome accession   NC_008261
Coordinates   603845..605701 (+) Length   618 a.a.
NCBI ID   WP_011590235.1    Uniprot ID   A0A0H2YTE5
Organism   Clostridium perfringens ATCC 13124     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 598845..610701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPF_RS02525 (CPF_0504) - 599856..600650 (+) 795 WP_011590233.1 Cof-type HAD-IIB family hydrolase -
  CPF_RS02530 (CPF_0505) - 600784..601230 (-) 447 WP_003478780.1 MarR family winged helix-turn-helix transcriptional regulator -
  CPF_RS02535 (CPF_0506) - 601555..603852 (+) 2298 WP_011590234.1 ABC transporter ATP-binding protein -
  CPF_RS02540 (CPF_0507) rcrQ 603845..605701 (+) 1857 WP_011590235.1 ABC transporter ATP-binding protein Regulator
  CPF_RS02545 (CPF_0508) - 606198..607079 (+) 882 WP_003478774.1 hypothetical protein -
  CPF_RS02550 (CPF_0509) - 607334..608383 (+) 1050 WP_003449992.1 AEC family transporter -
  CPF_RS02555 (CPF_0510) - 608710..609708 (+) 999 WP_011009879.1 2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 618 a.a.        Molecular weight: 68510.18 Da        Isoelectric Point: 6.1473

>NTDB_id=26168 CPF_RS02540 WP_011590235.1 603845..605701(+) (rcrQ) [Clostridium perfringens ATCC 13124]
MSKERKGGMGGQMGRMGGGPRAVEKAKDFKGTMKKLGVYLKPYSLSIAIVILFAIGSAAFSIVGPKILGKATTKIFEGLV
QKITGVPNASIDFGYIGNIAMILVALYLVSSLFGIIQSFIMSGVAQKVSYNLRKQISEKMDTLPLNYFDTRTNGEVLSRI
TNDVDTVNQTLNQSLSQIITSVVTLIGVLIMMFSISWIMTLATFIILPVSMVLISLVVKKSQKYFKSQQEYLGHLNGQVE
EVYGGHNIMKAFNREEASTKDFDELNNTLYKSAWKSQFLSGMMMPIMSFVGNLGYVLVSILGGWLTIKSVITVGDIQAFI
QYVRSFNQPISQMAQVANIMQSTAAAAERVFEFLDEEDEVKDPVNSVDPSEIRGEVEFEDVHFGYNEDKIIINDFSVDVK
PGQKVAIVGPTGAGKTTIVKLLMRFYDINSGSIKIDGHDIRDFKRADLRNLFGMVLQDTWLFNGTIMENLRYGRLDATDA
EVKEAAKAAHVDHFVKTLPDGYNMVLNEEASNISQGQKQLLTIARAFLKDPKLLILDEATSSVDTRTELLIQKAMEKLME
GRTSFIIAHRLSTIRDADLILVMKDGDIVEQGNHEELLEKGGFYSSLYNSQFEQSSAS

Nucleotide


Download         Length: 1857 bp        

>NTDB_id=26168 CPF_RS02540 WP_011590235.1 603845..605701(+) (rcrQ) [Clostridium perfringens ATCC 13124]
ATGAGTAAAGAAAGAAAAGGCGGAATGGGCGGCCAAATGGGTAGAATGGGCGGAGGCCCAAGAGCCGTTGAAAAAGCAAA
AGATTTTAAAGGAACAATGAAAAAGCTTGGGGTTTATTTAAAACCTTATAGTTTATCTATAGCTATTGTAATATTATTTG
CTATAGGAAGTGCTGCCTTCTCAATTGTAGGACCTAAGATTTTAGGTAAAGCCACTACTAAAATATTTGAAGGTTTAGTT
CAAAAGATAACAGGGGTACCAAATGCTTCTATAGATTTTGGATACATTGGAAATATAGCAATGATTTTAGTAGCTCTATA
CTTAGTAAGTTCATTATTTGGGATTATACAATCTTTTATAATGTCAGGAGTTGCTCAAAAGGTTTCTTATAATTTAAGAA
AGCAAATATCAGAAAAAATGGATACTTTACCTCTTAATTATTTTGATACAAGAACAAATGGAGAAGTTTTATCAAGAATT
ACAAATGACGTTGATACAGTGAACCAAACTTTAAATCAAAGTTTATCACAGATAATAACTTCAGTGGTTACTTTAATTGG
AGTATTAATAATGATGTTCTCAATAAGTTGGATTATGACTTTAGCAACATTTATAATACTTCCAGTTTCAATGGTTCTTA
TATCTTTAGTTGTTAAGAAATCTCAAAAATACTTTAAATCTCAACAAGAATACTTAGGTCATCTTAATGGTCAAGTAGAA
GAGGTTTATGGTGGACACAATATAATGAAAGCTTTCAATAGAGAAGAAGCTTCAACTAAAGACTTTGATGAATTAAATAA
CACTTTATATAAATCAGCTTGGAAATCTCAATTCTTATCAGGTATGATGATGCCAATCATGTCTTTTGTAGGAAACTTAG
GATATGTTTTAGTTTCAATACTTGGTGGATGGTTAACAATTAAAAGTGTTATAACAGTTGGGGATATACAAGCATTTATC
CAATATGTACGTTCATTTAACCAACCAATATCTCAAATGGCTCAGGTTGCAAATATAATGCAATCAACAGCGGCTGCTGC
TGAGAGAGTATTTGAATTCTTAGATGAAGAGGATGAGGTTAAAGATCCAGTTAATTCAGTAGATCCTTCAGAAATAAGAG
GAGAAGTTGAATTTGAAGATGTTCATTTTGGATATAATGAAGATAAGATAATAATAAATGATTTCTCAGTAGATGTTAAA
CCAGGGCAAAAGGTGGCTATTGTTGGACCTACAGGAGCAGGTAAAACTACAATAGTTAAATTATTAATGAGATTCTACGA
TATAAACAGTGGAAGTATTAAGATTGATGGTCATGATATAAGAGACTTTAAGCGTGCTGATTTACGTAACTTATTTGGTA
TGGTTCTTCAAGATACATGGCTATTTAATGGAACTATAATGGAGAATTTACGTTATGGAAGACTAGATGCAACAGATGCT
GAAGTTAAAGAAGCTGCTAAGGCTGCCCATGTTGATCATTTCGTAAAAACTTTACCAGATGGATATAATATGGTCTTAAA
CGAAGAAGCAAGTAATATATCACAAGGACAAAAGCAGCTTTTAACAATTGCTAGAGCTTTCTTAAAAGACCCTAAGCTAT
TAATACTTGATGAGGCTACAAGTTCAGTTGATACTCGTACAGAGCTTTTAATACAAAAAGCTATGGAAAAACTTATGGAA
GGAAGAACAAGCTTTATTATAGCTCACAGACTTTCTACTATACGCGATGCAGACTTAATCCTTGTTATGAAGGATGGAGA
TATAGTTGAACAAGGAAATCATGAAGAGCTTCTAGAAAAAGGTGGATTCTATTCAAGCCTTTACAATAGCCAATTTGAAC
AAAGTAGTGCTTCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(48-329)

ABC transporter (ABC_tran)

(393-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2YTE5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.764

95.307

0.484

Multiple sequence alignment