Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   Y89_RS29720 Genome accession   NZ_CP030913
Coordinates   6208432..6208956 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain Y89     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6203432..6213956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Y89_RS29705 (Y89_5710) aroB 6204548..6205654 (-) 1107 WP_019726985.1 3-dehydroquinate synthase -
  Y89_RS29710 (Y89_5711) aroK 6205704..6206222 (-) 519 WP_003095833.1 shikimate kinase AroK -
  Y89_RS29715 (Y89_5712) pilQ 6206234..6208378 (-) 2145 WP_019726987.1 type 4a pilus secretin PilQ Machinery gene
  Y89_RS29720 (Y89_5713) comL/pilP 6208432..6208956 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  Y89_RS29725 (Y89_5714) pilO 6208953..6209576 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  Y89_RS29730 pilN 6209573..6210167 (-) 595 Protein_5773 type 4a pilus biogenesis protein PilN -
  Y89_RS29735 (Y89_5716) pilM 6210167..6211231 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  Y89_RS29740 (Y89_5717) - 6211416..6213887 (+) 2472 WP_019726988.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=261635 Y89_RS29720 WP_003095836.1 6208432..6208956(-) (comL/pilP) [Pseudomonas aeruginosa strain Y89]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=261635 Y89_RS29720 WP_003095836.1 6208432..6208956(-) (comL/pilP) [Pseudomonas aeruginosa strain Y89]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362