Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CYL22_RS04830 Genome accession   NZ_CP025446
Coordinates   1029962..1030567 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Agona strain USDA-ARS-USMARC-76333     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1024962..1035567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYL22_RS04810 (CYL22_04995) - 1025351..1027111 (-) 1761 WP_000156447.1 Lon protease family protein -
  CYL22_RS04815 (CYL22_05000) matP 1027297..1027749 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  CYL22_RS04820 (CYL22_05005) ompA 1027821..1028879 (-) 1059 WP_001747676.1 porin OmpA -
  CYL22_RS04825 (CYL22_05010) sulA 1029236..1029745 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  CYL22_RS04830 (CYL22_05015) sxy/tfoX 1029962..1030567 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  CYL22_RS04835 (CYL22_05020) yccS 1030554..1032707 (-) 2154 WP_000950862.1 YccS family putative transporter -
  CYL22_RS04840 (CYL22_05025) - 1032726..1033172 (-) 447 WP_001261222.1 YccF domain-containing protein -
  CYL22_RS04845 (CYL22_05030) helD 1033296..1035350 (+) 2055 WP_000420499.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=261532 CYL22_RS04830 WP_001202375.1 1029962..1030567(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Agona strain USDA-ARS-USMARC-76333]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=261532 CYL22_RS04830 WP_001202375.1 1029962..1030567(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Agona strain USDA-ARS-USMARC-76333]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment