Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   Y82_RS31465 Genome accession   NZ_CP030912
Coordinates   6488311..6488835 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain Y82     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6483311..6493835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Y82_RS31450 (Y82_5988) aroB 6484427..6485533 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  Y82_RS31455 (Y82_5989) aroK 6485583..6486101 (-) 519 WP_003095833.1 shikimate kinase AroK -
  Y82_RS31460 (Y82_5990) pilQ 6486113..6488257 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  Y82_RS31465 (Y82_5991) comL/pilP 6488311..6488835 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  Y82_RS31470 (Y82_5992) pilO 6488832..6489455 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  Y82_RS31475 (Y82_5993) pilN 6489452..6490048 (-) 597 WP_015647905.1 type 4a pilus biogenesis protein PilN Machinery gene
  Y82_RS31480 (Y82_5994) pilM 6490048..6491112 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  Y82_RS31485 (Y82_5995) - 6491297..6493765 (+) 2469 WP_025297613.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=261532 Y82_RS31465 WP_003095836.1 6488311..6488835(-) (comL/pilP) [Pseudomonas aeruginosa strain Y82]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=261532 Y82_RS31465 WP_003095836.1 6488311..6488835(-) (comL/pilP) [Pseudomonas aeruginosa strain Y82]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
TCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362

Multiple sequence alignment