Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | Ysp71_RS30290 | Genome accession | NZ_CP030911 |
| Coordinates | 6281037..6281633 (-) | Length | 198 a.a. |
| NCBI ID | WP_003095839.1 | Uniprot ID | G3XD30 |
| Organism | Pseudomonas aeruginosa strain Y71 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 6276037..6286633
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Ysp71_RS30270 (Ysp71_5814) | aroK | 6277168..6277686 (-) | 519 | WP_003095833.1 | shikimate kinase AroK | - |
| Ysp71_RS30275 (Ysp71_5815) | pilQ | 6277698..6279842 (-) | 2145 | WP_019726987.1 | type 4a pilus secretin PilQ | Machinery gene |
| Ysp71_RS30280 (Ysp71_5816) | comL/pilP | 6279896..6280420 (-) | 525 | WP_003095836.1 | type 4a pilus biogenesis lipoprotein PilP | Machinery gene |
| Ysp71_RS30285 (Ysp71_5817) | pilO | 6280417..6281040 (-) | 624 | WP_003103268.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| Ysp71_RS30290 (Ysp71_5818) | pilN | 6281037..6281633 (-) | 597 | WP_003095839.1 | type 4a pilus biogenesis protein PilN | Machinery gene |
| Ysp71_RS30295 (Ysp71_5819) | pilM | 6281633..6282697 (-) | 1065 | WP_003110888.1 | type IV pilus assembly protein PilM | Machinery gene |
| Ysp71_RS30300 (Ysp71_5820) | - | 6282882..6285353 (+) | 2472 | WP_019726988.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 198 a.a. Molecular weight: 22213.55 Da Isoelectric Point: 10.0895
>NTDB_id=261429 Ysp71_RS30290 WP_003095839.1 6281037..6281633(-) (pilN) [Pseudomonas aeruginosa strain Y71]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK
Nucleotide
Download Length: 597 bp
>NTDB_id=261429 Ysp71_RS30290 WP_003095839.1 6281037..6281633(-) (pilN) [Pseudomonas aeruginosa strain Y71]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAAGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAAGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Legionella pneumophila strain ERS1305867 |
41.714 |
88.384 |
0.369 |