Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   Y31_RS26785 Genome accession   NZ_CP030910
Coordinates   5619554..5619979 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain Y31     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5614554..5624979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Y31_RS26770 (Y31_5146) pilX 5615118..5615705 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  Y31_RS26775 (Y31_5147) pilY1 5615717..5619208 (+) 3492 WP_115759779.1 type 4a pilus biogenesis protein PilY1 -
  Y31_RS26780 (Y31_5148) pilY2 5619210..5619557 (+) 348 WP_115759780.1 type 4a fimbrial biogenesis protein PilY2 -
  Y31_RS26785 (Y31_5149) comF 5619554..5619979 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  Y31_RS26790 (Y31_5150) ispH 5620026..5620970 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  Y31_RS26795 (Y31_5151) fkpB 5621056..5621496 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  Y31_RS26800 (Y31_5152) lspA 5621489..5621998 (-) 510 WP_003102615.1 signal peptidase II -
  Y31_RS26805 (Y31_5153) ileS 5621991..5624822 (-) 2832 WP_004352756.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=261319 Y31_RS26785 WP_003094721.1 5619554..5619979(+) (comF) [Pseudomonas aeruginosa strain Y31]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=261319 Y31_RS26785 WP_003094721.1 5619554..5619979(+) (comF) [Pseudomonas aeruginosa strain Y31]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383