Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   DS746_RS07855 Genome accession   NZ_CP030888
Coordinates   1518506..1519114 (-) Length   202 a.a.
NCBI ID   WP_002921280.1    Uniprot ID   A0AA44HKJ2
Organism   Campylobacter jejuni strain CS19     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1513506..1524114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DS746_RS07830 (DS746_1540) - 1513663..1514427 (+) 765 WP_002921261.1 TIGR02757 family protein -
  DS746_RS07835 (DS746_1541) - 1514431..1515195 (+) 765 WP_002855301.1 TSUP family transporter -
  DS746_RS07840 (DS746_1542) ctsF 1515188..1516369 (-) 1182 WP_002921263.1 type II secretion system F family protein Machinery gene
  DS746_RS07845 (DS746_1543) ctsE 1516366..1517925 (-) 1560 WP_032588785.1 GspE/PulE family protein Machinery gene
  DS746_RS07850 (DS746_1544) ctsX 1517915..1518502 (-) 588 WP_002921278.1 hypothetical protein Machinery gene
  DS746_RS07855 (DS746_1545) ctsP 1518506..1519114 (-) 609 WP_002921280.1 ATP-binding protein Machinery gene
  DS746_RS07860 (DS746_1546) ctsD 1519107..1520519 (-) 1413 WP_259831614.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  DS746_RS07865 (DS746_1547) ctsR 1520497..1520808 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 37586.87 Da        Isoelectric Point: 5.5040

>NTDB_id=261237 DS746_RS07855 WP_002921280.1 1518506..1519114(-) (ctsP) [Campylobacter jejuni strain CS19]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFELKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDTNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=261237 DS746_RS07855 WP_002921280.1 1518506..1519114(-) (ctsP) [Campylobacter jejuni strain CS19]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGCGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTAGGAATGTATGATTATGCAATGCTAGAAAGCATTAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTGAATTGAAAAATATTAGTCTTT
TAGAGCTTGATGATTATATTAAATTGAAATTCGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATACAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

82.424

94.286

0.777
  recA Bacillus subtilis subsp. subtilis str. 168

70.783

94.857

0.671
  recA Streptococcus pneumoniae Rx1

66.959

97.714

0.654
  recA Streptococcus pneumoniae D39

66.959

97.714

0.654
  recA Streptococcus pneumoniae R6

66.959

97.714

0.654
  recA Streptococcus pneumoniae TIGR4

66.959

97.714

0.654
  recA Streptococcus pyogenes NZ131

69.207

93.714

0.649
  recA Streptococcus mitis NCTC 12261

68.693

94

0.646
  recA Streptococcus mitis SK321

68.693

94

0.646
  recA Streptococcus mutans UA159

68.693

94

0.646
  recA Lactococcus lactis subsp. cremoris KW2

66.867

94.857

0.634
  recA Ralstonia pseudosolanacearum GMI1000

62.54

90

0.563
  recA Neisseria gonorrhoeae MS11

59.878

94

0.563
  recA Neisseria gonorrhoeae strain FA1090

59.878

94

0.563
  recA Acinetobacter baylyi ADP1

61.442

91.143

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

92.286

0.56
  recA Acinetobacter baumannii D1279779

61.129

91.143

0.557
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.567

96.286

0.554
  recA Glaesserella parasuis strain SC1401

55.362

98.571

0.546
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.561

91.143

0.543
  recA Vibrio cholerae strain A1552

59.561

91.143

0.543
  recA Pseudomonas stutzeri DSM 10701

59.006

92

0.543
  recA Helicobacter pylori strain NCTC11637

55.657

93.429

0.52
  recA Helicobacter pylori 26695

55.352

93.429

0.517
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.385

92.857

0.514

Multiple sequence alignment